miRNA display CGI


Results 21 - 40 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 3' -49.3 NC_001973.1 + 21144 0.67 0.996303
Target:  5'- gAGaucaUGCUUC-GCuc--GAGCUCGGCGg -3'
miRNA:   3'- -UCg---GCGAAGuUGuuuuUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 133659 0.67 0.996303
Target:  5'- cAGCCGCcgUUGAUGAGcGAGCgcccgaacCGGCGa -3'
miRNA:   3'- -UCGGCGa-AGUUGUUUuUUCGa-------GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 43709 0.67 0.996303
Target:  5'- cGGCagCGCUUCggUGAGGAAGCgcugcucgaUGGCGa -3'
miRNA:   3'- -UCG--GCGAAGuuGUUUUUUCGa--------GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 104355 0.67 0.996303
Target:  5'- cGGCgGCggCGACGAucAAGCg-GGCGu -3'
miRNA:   3'- -UCGgCGaaGUUGUUuuUUCGagCCGC- -5'
7639 3' -49.3 NC_001973.1 + 136860 0.67 0.995654
Target:  5'- cAGCCGCggauaCAGCuggcGGAGCUCGaCGg -3'
miRNA:   3'- -UCGGCGaa---GUUGuuu-UUUCGAGCcGC- -5'
7639 3' -49.3 NC_001973.1 + 133279 0.67 0.995654
Target:  5'- cGGCCGCggc--CGAGAAcgcGGC-CGGCGg -3'
miRNA:   3'- -UCGGCGaaguuGUUUUU---UCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 1837 0.67 0.995654
Target:  5'- cGGCCagGCUgUGGCAcagguugggguuGGAGGGCUUGGCGa -3'
miRNA:   3'- -UCGG--CGAaGUUGU------------UUUUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 160675 0.67 0.994915
Target:  5'- aAGCCgaugagaucauGCcUUAACuc--GAGCUCGGCGg -3'
miRNA:   3'- -UCGG-----------CGaAGUUGuuuuUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 109147 0.67 0.994915
Target:  5'- cGCCGCcUCGACGAGccgggcGAGC-CGGUc -3'
miRNA:   3'- uCGGCGaAGUUGUUUu-----UUCGaGCCGc -5'
7639 3' -49.3 NC_001973.1 + 29949 0.67 0.994836
Target:  5'- -cCCGCcUCGagcccguACAGAGAcgccGGCUCGGUGg -3'
miRNA:   3'- ucGGCGaAGU-------UGUUUUU----UCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 83818 0.67 0.994836
Target:  5'- gGGCCGCgcgCGGCG---GAGCUCGaaucggagagagaGCGg -3'
miRNA:   3'- -UCGGCGaa-GUUGUuuuUUCGAGC-------------CGC- -5'
7639 3' -49.3 NC_001973.1 + 160513 0.67 0.994836
Target:  5'- aGGUCGagccCGAUGAGAucacgccuaaacuGAGCUCGGCGg -3'
miRNA:   3'- -UCGGCgaa-GUUGUUUU-------------UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 93720 0.67 0.994593
Target:  5'- aGGCCGCgaagcgcuaccgCGACGAGGcGAGCcgccCGGCGa -3'
miRNA:   3'- -UCGGCGaa----------GUUGUUUU-UUCGa---GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 81767 0.67 0.994593
Target:  5'- aGGCCGCgaUCAugucgc--GCUCGGCGc -3'
miRNA:   3'- -UCGGCGa-AGUuguuuuuuCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 27896 0.67 0.994425
Target:  5'- cGCCGCgacucccguugcgCAACAAGcacgcGAGC-CGGCGa -3'
miRNA:   3'- uCGGCGaa-----------GUUGUUUu----UUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 3852 0.67 0.994078
Target:  5'- gGGCCgGCUcgUCGaugugcaugACGAucgucAGCUCGGCGa -3'
miRNA:   3'- -UCGG-CGA--AGU---------UGUUuuu--UCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 24283 0.67 0.994078
Target:  5'- cGGgCGCcUCGGCGAAugGGCgaccaCGGCGc -3'
miRNA:   3'- -UCgGCGaAGUUGUUUuuUCGa----GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 55560 0.67 0.994078
Target:  5'- cAGCgGCUUCAGCAuaucguAAAAGCgcaCGucGCGa -3'
miRNA:   3'- -UCGgCGAAGUUGUu-----UUUUCGa--GC--CGC- -5'
7639 3' -49.3 NC_001973.1 + 141930 0.67 0.994078
Target:  5'- cAGCgGCggCAACAAcAGcAGCUcgcCGGCGg -3'
miRNA:   3'- -UCGgCGaaGUUGUUuUU-UCGA---GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 106013 0.67 0.994078
Target:  5'- gGGCCGgUUCGcaucagacacgaAUAAAAcGGC-CGGCGg -3'
miRNA:   3'- -UCGGCgAAGU------------UGUUUUuUCGaGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.