miRNA display CGI


Results 41 - 60 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 3' -49.3 NC_001973.1 + 109364 0.67 0.993132
Target:  5'- cGGCCGUagcggUCGACGAGcgccucguAGGCgCGGCGc -3'
miRNA:   3'- -UCGGCGa----AGUUGUUUu-------UUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 134088 0.67 0.993132
Target:  5'- cGaCCGCUcggUCGGCc---AGGUUCGGCGg -3'
miRNA:   3'- uC-GGCGA---AGUUGuuuuUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 127566 0.67 0.993132
Target:  5'- aAGCCGaugagaUCAcgccCAAGcucGAGCUCGGCGg -3'
miRNA:   3'- -UCGGCga----AGUu---GUUUu--UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 19258 0.67 0.993132
Target:  5'- aGGCCGCga-AGCGGAGAucgccgAGCuauuuugccgcgUCGGCGa -3'
miRNA:   3'- -UCGGCGaagUUGUUUUU------UCG------------AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 56527 0.68 0.99207
Target:  5'- nGCCaaGCUcgGGCGGGGcGGGCUCGGCGc -3'
miRNA:   3'- uCGG--CGAagUUGUUUU-UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 10585 0.68 0.99207
Target:  5'- cGGCgCGC-UCGGCAAAGuauuGGCagUUGGCGa -3'
miRNA:   3'- -UCG-GCGaAGUUGUUUUu---UCG--AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 20113 0.68 0.99207
Target:  5'- cAGCCGCgggUCc----GAGGGCUUGGUGa -3'
miRNA:   3'- -UCGGCGa--AGuuguuUUUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 61677 0.68 0.99207
Target:  5'- cAGUCGCggC-GCGAAGcGGCgUCGGCGc -3'
miRNA:   3'- -UCGGCGaaGuUGUUUUuUCG-AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 128151 0.68 0.99207
Target:  5'- cAGCCGCgggUCc----GAGGGCUUGGUGa -3'
miRNA:   3'- -UCGGCGa--AGuuguuUUUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 112486 0.68 0.991957
Target:  5'- aGGCgCGUUUCGGCAGAAAgcccaccAGCUUgaGGCc -3'
miRNA:   3'- -UCG-GCGAAGUUGUUUUU-------UCGAG--CCGc -5'
7639 3' -49.3 NC_001973.1 + 132535 0.68 0.990881
Target:  5'- aGGCCGCcgggcgCGGCGGc-GGGCUCGaGCGc -3'
miRNA:   3'- -UCGGCGaa----GUUGUUuuUUCGAGC-CGC- -5'
7639 3' -49.3 NC_001973.1 + 83305 0.68 0.990881
Target:  5'- gGGCgCGCUcgucgacugcaUCAACAGGGAGGC--GGCGc -3'
miRNA:   3'- -UCG-GCGA-----------AGUUGUUUUUUCGagCCGC- -5'
7639 3' -49.3 NC_001973.1 + 9084 0.68 0.990881
Target:  5'- uGUCGCgcc-GCGu--GAGCUCGGCGc -3'
miRNA:   3'- uCGGCGaaguUGUuuuUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 81819 0.68 0.989556
Target:  5'- cGCCGCcggcggCGACGAGAcgacGAGCUCaGGuCGa -3'
miRNA:   3'- uCGGCGaa----GUUGUUUU----UUCGAG-CC-GC- -5'
7639 3' -49.3 NC_001973.1 + 107429 0.68 0.988692
Target:  5'- -aCCGCUcuuuauauuuuuuacUgAACAAAAAacuuuugcAGCUCGGCGa -3'
miRNA:   3'- ucGGCGA---------------AgUUGUUUUU--------UCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 47749 0.68 0.988086
Target:  5'- cGGCCGCc-CGGCGGAAucacGGCcuccUCGGCGc -3'
miRNA:   3'- -UCGGCGaaGUUGUUUUu---UCG----AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 40022 0.68 0.988086
Target:  5'- aGGCCGaacUCGcgcuGCAGccuGAGCUCGGUGu -3'
miRNA:   3'- -UCGGCga-AGU----UGUUuu-UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 56500 0.68 0.988086
Target:  5'- cGCCaaGCUcgGGCGGGGcGGGCUCGGCGc -3'
miRNA:   3'- uCGG--CGAagUUGUUUU-UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 56446 0.68 0.988086
Target:  5'- cGCCaaGCUcgGGCGGGGcGGGCUCGGCGc -3'
miRNA:   3'- uCGG--CGAagUUGUUUU-UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 139046 0.68 0.98646
Target:  5'- uGCCGCggaagUCGGCGAAGugccGUUCGaGCGc -3'
miRNA:   3'- uCGGCGa----AGUUGUUUUuu--CGAGC-CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.