Results 21 - 30 of 30 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 34616 | 0.67 | 0.993445 |
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Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 31547 | 0.67 | 0.993445 |
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Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 28478 | 0.67 | 0.993445 |
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Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 25409 | 0.67 | 0.993445 |
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Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 22340 | 0.67 | 0.993445 |
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Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 19271 | 0.67 | 0.993445 |
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Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 16202 | 0.67 | 0.993445 |
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Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 13134 | 0.67 | 0.993445 |
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Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | + | 5315 | 0.71 | 0.934869 |
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Target: 5'- -cCUCCGGGGCUGcguccugccuuGUUGGGUg- -3' miRNA: 3'- uuGAGGCCCCGAC-----------UAGUCCAau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 2864 | 0.7 | 0.949869 |
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Target: 5'- uGCUCCGGGGCcgguggcGGUCuGGUa- -3' miRNA: 3'- uUGAGGCCCCGa------CUAGuCCAau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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