miRNA display CGI


Results 1 - 20 of 60 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 37638 0.66 0.999587
Target:  5'- gCGuGUGGAGGAcGGGGuGGAgCGGg -3'
miRNA:   3'- -GC-CACUUCUU-CCCCuCCU-GCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 86068 0.66 0.999526
Target:  5'- cCGGgcccgugGAGGAggcaagaaagcuguaGGGGGAgGGGCGAa -3'
miRNA:   3'- -GCCa------CUUCU---------------UCCCCU-CCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 70211 0.66 0.999526
Target:  5'- gGGUGAuacAGAAagccuugaccuguucGGGGAGGugGu -3'
miRNA:   3'- gCCACU---UCUU---------------CCCCUCCugCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 176234 0.66 0.999481
Target:  5'- aCGGaGggGAAGGGGGGuACa- -3'
miRNA:   3'- -GCCaCuuCUUCCCCUCcUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 94911 0.66 0.999481
Target:  5'- uGG-GggGAGGGGaAGGGCGc -3'
miRNA:   3'- gCCaCuuCUUCCCcUCCUGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 190048 0.66 0.999481
Target:  5'- uGGUG-GGAcuccuccgacGGcGGGGGGACGAa -3'
miRNA:   3'- gCCACuUCU----------UC-CCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 51447 0.66 0.999352
Target:  5'- aCGG-GA--AAGGGGAGGGCa- -3'
miRNA:   3'- -GCCaCUucUUCCCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 76224 0.67 0.999196
Target:  5'- aGGaUGAAGAAGGaGGAGaaaaaggaggaGACGAu -3'
miRNA:   3'- gCC-ACUUCUUCC-CCUC-----------CUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 166312 0.67 0.999196
Target:  5'- uGGaUGAAGAAGaGccagaacuGGAGGACGAc -3'
miRNA:   3'- gCC-ACUUCUUC-C--------CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 94804 0.67 0.999009
Target:  5'- cCGGgGAGGAgcgGGGuGGGGGugGGa -3'
miRNA:   3'- -GCCaCUUCU---UCC-CCUCCugCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 105332 0.67 0.999009
Target:  5'- gCGGcugcugGAAGAGGGcgacgaGGAGGAUGAa -3'
miRNA:   3'- -GCCa-----CUUCUUCC------CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 93354 0.67 0.998785
Target:  5'- gGGUGGAGucuaGGGAGGGCu- -3'
miRNA:   3'- gCCACUUCuuc-CCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 135512 0.67 0.998785
Target:  5'- aGGgaacaGGAGAAGGGcaGGGACGAc -3'
miRNA:   3'- gCCa----CUUCUUCCCc-UCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 99835 0.67 0.998785
Target:  5'- aCGGUGGcuGGGcGGGAGGAgCGGc -3'
miRNA:   3'- -GCCACUucUUC-CCCUCCU-GCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 84786 0.67 0.99852
Target:  5'- gCGGUcgaGGAGGAGGGGuacGGACu- -3'
miRNA:   3'- -GCCA---CUUCUUCCCCu--CCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 213943 0.67 0.99852
Target:  5'- aCGGUGGcgguaagcuGGAAGGcgacGAGGACGGa -3'
miRNA:   3'- -GCCACU---------UCUUCCc---CUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 150491 0.67 0.99852
Target:  5'- gCGGUGGcagcuuGggGGGuGAGGGCa- -3'
miRNA:   3'- -GCCACUu-----CuuCCC-CUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 90078 0.67 0.998208
Target:  5'- gCGGUGcuGGcGGGGGuGGugGAc -3'
miRNA:   3'- -GCCACu-UCuUCCCCuCCugCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 73806 0.67 0.998208
Target:  5'- uCGGaUGAcgAGGAGGaGGAGGAgGGg -3'
miRNA:   3'- -GCC-ACU--UCUUCC-CCUCCUgCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 45931 0.68 0.997842
Target:  5'- ---cGAGGGAGaGGAGGACGAc -3'
miRNA:   3'- gccaCUUCUUCcCCUCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.