Results 1 - 20 of 60 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 37638 | 0.66 | 0.999587 |
Target: 5'- gCGuGUGGAGGAcGGGGuGGAgCGGg -3' miRNA: 3'- -GC-CACUUCUU-CCCCuCCU-GCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 70211 | 0.66 | 0.999526 |
Target: 5'- gGGUGAuacAGAAagccuugaccuguucGGGGAGGugGu -3' miRNA: 3'- gCCACU---UCUU---------------CCCCUCCugCu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 86068 | 0.66 | 0.999526 |
Target: 5'- cCGGgcccgugGAGGAggcaagaaagcuguaGGGGGAgGGGCGAa -3' miRNA: 3'- -GCCa------CUUCU---------------UCCCCU-CCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 190048 | 0.66 | 0.999481 |
Target: 5'- uGGUG-GGAcuccuccgacGGcGGGGGGACGAa -3' miRNA: 3'- gCCACuUCU----------UC-CCCUCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 94911 | 0.66 | 0.999481 |
Target: 5'- uGG-GggGAGGGGaAGGGCGc -3' miRNA: 3'- gCCaCuuCUUCCCcUCCUGCu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 176234 | 0.66 | 0.999481 |
Target: 5'- aCGGaGggGAAGGGGGGuACa- -3' miRNA: 3'- -GCCaCuuCUUCCCCUCcUGcu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 51447 | 0.66 | 0.999352 |
Target: 5'- aCGG-GA--AAGGGGAGGGCa- -3' miRNA: 3'- -GCCaCUucUUCCCCUCCUGcu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 166312 | 0.67 | 0.999196 |
Target: 5'- uGGaUGAAGAAGaGccagaacuGGAGGACGAc -3' miRNA: 3'- gCC-ACUUCUUC-C--------CCUCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 76224 | 0.67 | 0.999196 |
Target: 5'- aGGaUGAAGAAGGaGGAGaaaaaggaggaGACGAu -3' miRNA: 3'- gCC-ACUUCUUCC-CCUC-----------CUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 94804 | 0.67 | 0.999009 |
Target: 5'- cCGGgGAGGAgcgGGGuGGGGGugGGa -3' miRNA: 3'- -GCCaCUUCU---UCC-CCUCCugCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 105332 | 0.67 | 0.999009 |
Target: 5'- gCGGcugcugGAAGAGGGcgacgaGGAGGAUGAa -3' miRNA: 3'- -GCCa-----CUUCUUCC------CCUCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 93354 | 0.67 | 0.998785 |
Target: 5'- gGGUGGAGucuaGGGAGGGCu- -3' miRNA: 3'- gCCACUUCuuc-CCCUCCUGcu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 135512 | 0.67 | 0.998785 |
Target: 5'- aGGgaacaGGAGAAGGGcaGGGACGAc -3' miRNA: 3'- gCCa----CUUCUUCCCc-UCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 99835 | 0.67 | 0.998785 |
Target: 5'- aCGGUGGcuGGGcGGGAGGAgCGGc -3' miRNA: 3'- -GCCACUucUUC-CCCUCCU-GCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 150491 | 0.67 | 0.99852 |
Target: 5'- gCGGUGGcagcuuGggGGGuGAGGGCa- -3' miRNA: 3'- -GCCACUu-----CuuCCC-CUCCUGcu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 84786 | 0.67 | 0.99852 |
Target: 5'- gCGGUcgaGGAGGAGGGGuacGGACu- -3' miRNA: 3'- -GCCA---CUUCUUCCCCu--CCUGcu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 213943 | 0.67 | 0.99852 |
Target: 5'- aCGGUGGcgguaagcuGGAAGGcgacGAGGACGGa -3' miRNA: 3'- -GCCACU---------UCUUCCc---CUCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 90078 | 0.67 | 0.998208 |
Target: 5'- gCGGUGcuGGcGGGGGuGGugGAc -3' miRNA: 3'- -GCCACu-UCuUCCCCuCCugCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 73806 | 0.67 | 0.998208 |
Target: 5'- uCGGaUGAcgAGGAGGaGGAGGAgGGg -3' miRNA: 3'- -GCC-ACU--UCUUCC-CCUCCUgCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 45931 | 0.68 | 0.997842 |
Target: 5'- ---cGAGGGAGaGGAGGACGAc -3' miRNA: 3'- gccaCUUCUUCcCCUCCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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