miRNA display CGI


Results 1 - 20 of 45 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 235059 0.72 0.941132
Target:  5'- gCGUCCACCUaGGAgGGugCGCg -3'
miRNA:   3'- aGUAGGUGGA-CUUgUCugGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 234587 0.7 0.975437
Target:  5'- gCGUCCACCgGGuagaaccccGCGGGCCGCc -3'
miRNA:   3'- aGUAGGUGGaCU---------UGUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 233451 0.66 0.999034
Target:  5'- cCAgCCACCgcgcGGGCAGcACCGCg -3'
miRNA:   3'- aGUaGGUGGa---CUUGUC-UGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 224274 0.66 0.998815
Target:  5'- cUCAUCaACCUGucGAUGGAUCGCUa -3'
miRNA:   3'- -AGUAGgUGGAC--UUGUCUGGCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 221717 0.71 0.966247
Target:  5'- gUCAUCCACUUGGAgAGcucCCGCg -3'
miRNA:   3'- -AGUAGGUGGACUUgUCu--GGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 221516 1.01 0.039854
Target:  5'- cUCAUCCACCUGAACAGACCGCUa -3'
miRNA:   3'- -AGUAGGUGGACUUGUCUGGCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 198871 0.71 0.954866
Target:  5'- -gGUCCGCCggucucGACGGACCGCg -3'
miRNA:   3'- agUAGGUGGac----UUGUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 197088 0.66 0.999034
Target:  5'- cCAgCCACCgcgcGGGCAGcACCGCg -3'
miRNA:   3'- aGUaGGUGGa---CUUGUC-UGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 195952 0.7 0.975437
Target:  5'- gCGUCCACCgGGuagaaccccGCGGGCCGCc -3'
miRNA:   3'- aGUAGGUGGaCU---------UGUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 195480 0.72 0.941132
Target:  5'- gCGUCCACCUaGGAgGGugCGCg -3'
miRNA:   3'- aGUAGGUGGA-CUUgUCugGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 176871 0.66 0.999034
Target:  5'- -aAUCgCACCUGAAaAGACaCGCUg -3'
miRNA:   3'- agUAG-GUGGACUUgUCUG-GCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 164889 0.67 0.996419
Target:  5'- -uGUCCGCCcGAGCAgGugCGCg -3'
miRNA:   3'- agUAGGUGGaCUUGU-CugGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 154347 0.69 0.989631
Target:  5'- -gAUCCGCCUGAGC-GAgCGCc -3'
miRNA:   3'- agUAGGUGGACUUGuCUgGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 153368 0.67 0.996419
Target:  5'- gUCGUCgUACUUGGGCguGGGCCGCg -3'
miRNA:   3'- -AGUAG-GUGGACUUG--UCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 152695 0.66 0.999034
Target:  5'- aCAUCCGCUUGuacguGGCGGccgaACCGCUg -3'
miRNA:   3'- aGUAGGUGGAC-----UUGUC----UGGCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 151907 0.69 0.989631
Target:  5'- cUCGUCCACCUGcGACuGGAuCUGCUc -3'
miRNA:   3'- -AGUAGGUGGAC-UUG-UCU-GGCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 145786 0.66 0.999217
Target:  5'- uUCGUCUugCgGGACAGGUCGCg -3'
miRNA:   3'- -AGUAGGugGaCUUGUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 144694 0.66 0.999034
Target:  5'- gCGUCUACgaGAucaAGGCCGCUa -3'
miRNA:   3'- aGUAGGUGgaCUug-UCUGGCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 144674 0.66 0.998555
Target:  5'- cCGUCCGCCgccgcggcgccGGGCAGacaGCCGCUg -3'
miRNA:   3'- aGUAGGUGGa----------CUUGUC---UGGCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 143091 0.7 0.97805
Target:  5'- cCcgUgGCCgUGAGCAGACCGCg -3'
miRNA:   3'- aGuaGgUGG-ACUUGUCUGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.