miRNA display CGI


Results 1 - 20 of 48 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 226519 1.03 0.011163
Target:  5'- gCGCCCACGGUCCGGGCACAAUCa -3'
miRNA:   3'- -GCGGGUGCCAGGCCCGUGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 81292 0.81 0.295224
Target:  5'- gCGUCCGCGGUUCGGGCACuaguUCg -3'
miRNA:   3'- -GCGGGUGCCAGGCCCGUGuu--AG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 90040 0.77 0.481745
Target:  5'- gGCCCgagcgACGGUCUGGGCgGCGGUCg -3'
miRNA:   3'- gCGGG-----UGCCAGGCCCG-UGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 220506 0.76 0.531661
Target:  5'- aCGUCCGCGG-CCGGGaCGCAGUUu -3'
miRNA:   3'- -GCGGGUGCCaGGCCC-GUGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 166102 0.72 0.749627
Target:  5'- gCGCCCACGGUCUGGccguCAUcGUCg -3'
miRNA:   3'- -GCGGGUGCCAGGCCc---GUGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 117977 0.72 0.749627
Target:  5'- gGCCgagCACGG-CCGGGCACGAa- -3'
miRNA:   3'- gCGG---GUGCCaGGCCCGUGUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 136374 0.7 0.833426
Target:  5'- cCGCUCGCGGUCaaaaGCGCGAUCg -3'
miRNA:   3'- -GCGGGUGCCAGgcc-CGUGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 195927 0.7 0.841884
Target:  5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3'
miRNA:   3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 65813 0.7 0.841884
Target:  5'- uCGCCCcuGCGGUCCGcaaucggcGGCGCAGc- -3'
miRNA:   3'- -GCGGG--UGCCAGGC--------CCGUGUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 234612 0.7 0.841884
Target:  5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3'
miRNA:   3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 84780 0.7 0.850141
Target:  5'- aCGCCCGCGGUCgaggaggagGGGUACGGa- -3'
miRNA:   3'- -GCGGGUGCCAGg--------CCCGUGUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 150022 0.69 0.873622
Target:  5'- uGCUCACGGcuugcguggaggUCUGGGCGCGAg- -3'
miRNA:   3'- gCGGGUGCC------------AGGCCCGUGUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 88512 0.69 0.880999
Target:  5'- -uUCCACGcUCaCGGGCACGGUCa -3'
miRNA:   3'- gcGGGUGCcAG-GCCCGUGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 35985 0.69 0.880999
Target:  5'- gCGCCCGagaucUGGgucUCCGGGCACGggCa -3'
miRNA:   3'- -GCGGGU-----GCC---AGGCCCGUGUuaG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 69061 0.69 0.880999
Target:  5'- cCGgCUACGcGUCCGGGUucCAGUCg -3'
miRNA:   3'- -GCgGGUGC-CAGGCCCGu-GUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 102391 0.69 0.880999
Target:  5'- uGUUCGCGGUaggcgUCGGGCACGAUg -3'
miRNA:   3'- gCGGGUGCCA-----GGCCCGUGUUAg -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 176090 0.68 0.895043
Target:  5'- gGCCCACGaUCCGGGUu--AUCu -3'
miRNA:   3'- gCGGGUGCcAGGCCCGuguUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 95399 0.68 0.895043
Target:  5'- aGCCgCgACGGUUCGGGCGgAGUUu -3'
miRNA:   3'- gCGG-G-UGCCAGGCCCGUgUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 146292 0.68 0.895043
Target:  5'- aGUCCugGGUgugUCGGGCcgcgGCAGUCg -3'
miRNA:   3'- gCGGGugCCA---GGCCCG----UGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 41666 0.68 0.901702
Target:  5'- uCGCCCugGGcUCCGacGGCGCcGUUg -3'
miRNA:   3'- -GCGGGugCC-AGGC--CCGUGuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.