Results 1 - 20 of 48 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 35985 | 0.69 | 0.880999 |
Target: 5'- gCGCCCGagaucUGGgucUCCGGGCACGggCa -3' miRNA: 3'- -GCGGGU-----GCC---AGGCCCGUGUuaG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 41666 | 0.68 | 0.901702 |
Target: 5'- uCGCCCugGGcUCCGacGGCGCcGUUg -3' miRNA: 3'- -GCGGGugCC-AGGC--CCGUGuUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 43345 | 0.67 | 0.933333 |
Target: 5'- gCGCCCGCGGUCUGcuauucguccacgauGGaCACcAUCa -3' miRNA: 3'- -GCGGGUGCCAGGC---------------CC-GUGuUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 50159 | 0.67 | 0.943177 |
Target: 5'- gCGCCCugGGgCCcuucgugggcaagauGGGCACcGUCu -3' miRNA: 3'- -GCGGGugCCaGG---------------CCCGUGuUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 58178 | 0.68 | 0.908113 |
Target: 5'- -aCUCACGGUUgggCGGGCACAAUg -3' miRNA: 3'- gcGGGUGCCAG---GCCCGUGUUAg -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 61990 | 0.66 | 0.968727 |
Target: 5'- gCGCUCGCGGUCacguccUGGGCAUccaccgcgccGAUCu -3' miRNA: 3'- -GCGGGUGCCAG------GCCCGUG----------UUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 64248 | 0.67 | 0.945935 |
Target: 5'- gGCCCGCGGgcaCGGGCGu---- -3' miRNA: 3'- gCGGGUGCCag-GCCCGUguuag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 64905 | 0.66 | 0.962068 |
Target: 5'- gGCUaCAUGuGUCCGGGCAUcuUCg -3' miRNA: 3'- gCGG-GUGC-CAGGCCCGUGuuAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 65813 | 0.7 | 0.841884 |
Target: 5'- uCGCCCcuGCGGUCCGcaaucggcGGCGCAGc- -3' miRNA: 3'- -GCGGG--UGCCAGGC--------CCGUGUUag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 69061 | 0.69 | 0.880999 |
Target: 5'- cCGgCUACGcGUCCGGGUucCAGUCg -3' miRNA: 3'- -GCgGGUGC-CAGGCCCGu-GUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 78517 | 0.66 | 0.954484 |
Target: 5'- gCGCCgCcCGGacaCCGGGCGCcGUCa -3' miRNA: 3'- -GCGG-GuGCCa--GGCCCGUGuUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 79947 | 0.66 | 0.965511 |
Target: 5'- -aCCCGCGucgCCGGGCACGGc- -3' miRNA: 3'- gcGGGUGCca-GGCCCGUGUUag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 81292 | 0.81 | 0.295224 |
Target: 5'- gCGUCCGCGGUUCGGGCACuaguUCg -3' miRNA: 3'- -GCGGGUGCCAGGCCCGUGuu--AG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 84780 | 0.7 | 0.850141 |
Target: 5'- aCGCCCGCGGUCgaggaggagGGGUACGGa- -3' miRNA: 3'- -GCGGGUGCCAGg--------CCCGUGUUag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 88512 | 0.69 | 0.880999 |
Target: 5'- -uUCCACGcUCaCGGGCACGGUCa -3' miRNA: 3'- gcGGGUGCcAG-GCCCGUGUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 88836 | 0.66 | 0.965177 |
Target: 5'- gCGCCCAUGG-CCGccacuguGGCGCGugaAUCg -3' miRNA: 3'- -GCGGGUGCCaGGC-------CCGUGU---UAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 90040 | 0.77 | 0.481745 |
Target: 5'- gGCCCgagcgACGGUCUGGGCgGCGGUCg -3' miRNA: 3'- gCGGG-----UGCCAGGCCCG-UGUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 95399 | 0.68 | 0.895043 |
Target: 5'- aGCCgCgACGGUUCGGGCGgAGUUu -3' miRNA: 3'- gCGG-G-UGCCAGGCCCGUgUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 102391 | 0.69 | 0.880999 |
Target: 5'- uGUUCGCGGUaggcgUCGGGCACGAUg -3' miRNA: 3'- gCGGGUGCCA-----GGCCCGUGUUAg -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 106474 | 0.68 | 0.925841 |
Target: 5'- aCGCUgGugauCGGUCCGGGuCACAcgCa -3' miRNA: 3'- -GCGGgU----GCCAGGCCC-GUGUuaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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