miRNA display CGI


Results 41 - 60 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 31079 0.66 0.931859
Target:  5'- uUCGCGCucaCCAGCCuCGUcgaCCCCg -3'
miRNA:   3'- -GGCGCGc--GGUCGG-GUA---GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 40087 0.66 0.941976
Target:  5'- gCCGcCGCGCCAcacGCUgAgCCCCg -3'
miRNA:   3'- -GGC-GCGCGGU---CGGgUaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233111 0.66 0.946647
Target:  5'- aCgGCGC-CCAGCUCGUCCa- -3'
miRNA:   3'- -GgCGCGcGGUCGGGUAGGgg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 45403 0.66 0.937047
Target:  5'- uCCGCuGcCGCCugcAGCCCAgUCUCCg -3'
miRNA:   3'- -GGCG-C-GCGG---UCGGGU-AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 47502 0.66 0.951063
Target:  5'- gCCGCGCGaggcCCAGCUCgAUCUCg -3'
miRNA:   3'- -GGCGCGC----GGUCGGG-UAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 76723 0.66 0.931859
Target:  5'- cCCGCaguGCGCCGGCaaCAUCCgCg -3'
miRNA:   3'- -GGCG---CGCGGUCGg-GUAGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 197315 0.66 0.951063
Target:  5'- gCCGCGCGgCGGCUgcUgCCCg -3'
miRNA:   3'- -GGCGCGCgGUCGGguAgGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 71115 0.66 0.946647
Target:  5'- cCCgGCGcCGCCAGCaCCAguuucgCCUCg -3'
miRNA:   3'- -GG-CGC-GCGGUCG-GGUa-----GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 197531 0.66 0.946647
Target:  5'- cUCGCGCcCCAGCgCCAgcgCgCCCa -3'
miRNA:   3'- -GGCGCGcGGUCG-GGUa--G-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 64224 0.66 0.931859
Target:  5'- aUCGCGCGCUAGCgCCGaugaCCUg -3'
miRNA:   3'- -GGCGCGCGGUCG-GGUag--GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 143074 0.66 0.941976
Target:  5'- aCCGCgGUGCaC-GCCCGUgCCCa -3'
miRNA:   3'- -GGCG-CGCG-GuCGGGUAgGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 57860 0.66 0.946647
Target:  5'- gCCGCGCcgaGCCAGCggGcCCCCg -3'
miRNA:   3'- -GGCGCG---CGGUCGggUaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 56574 0.66 0.946647
Target:  5'- gCCGC-CGCC-GCCCgAUCCaCCu -3'
miRNA:   3'- -GGCGcGCGGuCGGG-UAGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 196795 0.66 0.931859
Target:  5'- gUCGCGCGCgGgguGCCCAcgCCCa -3'
miRNA:   3'- -GGCGCGCGgU---CGGGUa-GGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 58082 0.66 0.941976
Target:  5'- aCUGCGuCGCCuuGCCC-UCCUCc -3'
miRNA:   3'- -GGCGC-GCGGu-CGGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 1220 0.66 0.951063
Target:  5'- aCCG-GCGCCGgcGCCCAgcacgCCCg -3'
miRNA:   3'- -GGCgCGCGGU--CGGGUa----GGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 194598 0.67 0.920701
Target:  5'- gCCGCcaacccccaGCGCCcgcaacacCCCGUCCCCg -3'
miRNA:   3'- -GGCG---------CGCGGuc------GGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233039 0.67 0.895277
Target:  5'- cCCGCGCGCagaaagugcgaCAGCUCcgCCgCCa -3'
miRNA:   3'- -GGCGCGCG-----------GUCGGGuaGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 29704 0.67 0.92641
Target:  5'- aCuuGCGCUGGCCCGucgaccuuaUCCCCa -3'
miRNA:   3'- gGcgCGCGGUCGGGU---------AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 80150 0.67 0.920701
Target:  5'- gCCGCGCGauGGCCCcggCCUCg -3'
miRNA:   3'- -GGCGCGCggUCGGGua-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.