miRNA display CGI


Results 41 - 60 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 56657 0.67 0.908502
Target:  5'- aCGUGCGCaCGGCgCgGUCCCg -3'
miRNA:   3'- gGCGCGCG-GUCG-GgUAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 57697 0.68 0.888287
Target:  5'- gCCGCaGCGCCAGCgUCGgcggCUCCg -3'
miRNA:   3'- -GGCG-CGCGGUCG-GGUa---GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 57860 0.66 0.946647
Target:  5'- gCCGCGCcgaGCCAGCggGcCCCCg -3'
miRNA:   3'- -GGCGCG---CGGUCGggUaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 58082 0.66 0.941976
Target:  5'- aCUGCGuCGCCuuGCCC-UCCUCc -3'
miRNA:   3'- -GGCGC-GCGGu-CGGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 61667 0.67 0.92641
Target:  5'- gCCGgGCGCgCuGCUCAUCCgCa -3'
miRNA:   3'- -GGCgCGCG-GuCGGGUAGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 64126 0.67 0.908502
Target:  5'- aCGCGCGCUAG-CCGUCUUUg -3'
miRNA:   3'- gGCGCGCGGUCgGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 64224 0.66 0.931859
Target:  5'- aUCGCGCGCUAGCgCCGaugaCCUg -3'
miRNA:   3'- -GGCGCGCGGUCG-GGUag--GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 64513 0.7 0.787033
Target:  5'- gCCGC-CGCCGcaacGCCCGUgCCCg -3'
miRNA:   3'- -GGCGcGCGGU----CGGGUAgGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 64516 0.68 0.857915
Target:  5'- cCCGCcCGCCGGCUCgacaucgguGUCCCUg -3'
miRNA:   3'- -GGCGcGCGGUCGGG---------UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 67330 0.71 0.727248
Target:  5'- gUCGCGCGCCAGUCgCAUCaCUa -3'
miRNA:   3'- -GGCGCGCGGUCGG-GUAG-GGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 68234 0.67 0.908502
Target:  5'- cCCGCcCGCCgacuuccagcGGCCCGUCUUCa -3'
miRNA:   3'- -GGCGcGCGG----------UCGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 71115 0.66 0.946647
Target:  5'- cCCgGCGcCGCCAGCaCCAguuucgCCUCg -3'
miRNA:   3'- -GG-CGC-GCGGUCG-GGUa-----GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 71801 0.71 0.747646
Target:  5'- gCGCGCGCaCAGCaggCCGUgCCCg -3'
miRNA:   3'- gGCGCGCG-GUCG---GGUAgGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 72270 0.68 0.873572
Target:  5'- -aGCGCGUCuacgAGCUCGUCUCCg -3'
miRNA:   3'- ggCGCGCGG----UCGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 74509 0.7 0.777389
Target:  5'- cCCG-GCGCCGGCUCGUCuuuuCCCu -3'
miRNA:   3'- -GGCgCGCGGUCGGGUAG----GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 76723 0.66 0.931859
Target:  5'- cCCGCaguGCGCCGGCaaCAUCCgCg -3'
miRNA:   3'- -GGCG---CGCGGUCGg-GUAGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 78367 0.66 0.941976
Target:  5'- uCCGCGCccucuucuuuGCCGGCUC-UCCUCc -3'
miRNA:   3'- -GGCGCG----------CGGUCGGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 78530 0.69 0.83191
Target:  5'- aCCGgGCGCCgucaggacguaaaAGaCCCgAUCCCCg -3'
miRNA:   3'- -GGCgCGCGG-------------UC-GGG-UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 79298 0.66 0.937047
Target:  5'- -gGCGCGUgGGCCCAgCCUg -3'
miRNA:   3'- ggCGCGCGgUCGGGUaGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 80150 0.67 0.920701
Target:  5'- gCCGCGCGauGGCCCcggCCUCg -3'
miRNA:   3'- -GGCGCGCggUCGGGua-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.