Results 41 - 60 of 180 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | - | 56657 | 0.67 | 0.908502 |
Target: 5'- aCGUGCGCaCGGCgCgGUCCCg -3' miRNA: 3'- gGCGCGCG-GUCG-GgUAGGGg -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 57697 | 0.68 | 0.888287 |
Target: 5'- gCCGCaGCGCCAGCgUCGgcggCUCCg -3' miRNA: 3'- -GGCG-CGCGGUCG-GGUa---GGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 57860 | 0.66 | 0.946647 |
Target: 5'- gCCGCGCcgaGCCAGCggGcCCCCg -3' miRNA: 3'- -GGCGCG---CGGUCGggUaGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 58082 | 0.66 | 0.941976 |
Target: 5'- aCUGCGuCGCCuuGCCC-UCCUCc -3' miRNA: 3'- -GGCGC-GCGGu-CGGGuAGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | - | 61667 | 0.67 | 0.92641 |
Target: 5'- gCCGgGCGCgCuGCUCAUCCgCa -3' miRNA: 3'- -GGCgCGCG-GuCGGGUAGGgG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 64126 | 0.67 | 0.908502 |
Target: 5'- aCGCGCGCUAG-CCGUCUUUg -3' miRNA: 3'- gGCGCGCGGUCgGGUAGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 64224 | 0.66 | 0.931859 |
Target: 5'- aUCGCGCGCUAGCgCCGaugaCCUg -3' miRNA: 3'- -GGCGCGCGGUCG-GGUag--GGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | - | 64513 | 0.7 | 0.787033 |
Target: 5'- gCCGC-CGCCGcaacGCCCGUgCCCg -3' miRNA: 3'- -GGCGcGCGGU----CGGGUAgGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 64516 | 0.68 | 0.857915 |
Target: 5'- cCCGCcCGCCGGCUCgacaucgguGUCCCUg -3' miRNA: 3'- -GGCGcGCGGUCGGG---------UAGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | - | 67330 | 0.71 | 0.727248 |
Target: 5'- gUCGCGCGCCAGUCgCAUCaCUa -3' miRNA: 3'- -GGCGCGCGGUCGG-GUAG-GGg -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 68234 | 0.67 | 0.908502 |
Target: 5'- cCCGCcCGCCgacuuccagcGGCCCGUCUUCa -3' miRNA: 3'- -GGCGcGCGG----------UCGGGUAGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 71115 | 0.66 | 0.946647 |
Target: 5'- cCCgGCGcCGCCAGCaCCAguuucgCCUCg -3' miRNA: 3'- -GG-CGC-GCGGUCG-GGUa-----GGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 71801 | 0.71 | 0.747646 |
Target: 5'- gCGCGCGCaCAGCaggCCGUgCCCg -3' miRNA: 3'- gGCGCGCG-GUCG---GGUAgGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | - | 72270 | 0.68 | 0.873572 |
Target: 5'- -aGCGCGUCuacgAGCUCGUCUCCg -3' miRNA: 3'- ggCGCGCGG----UCGGGUAGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 74509 | 0.7 | 0.777389 |
Target: 5'- cCCG-GCGCCGGCUCGUCuuuuCCCu -3' miRNA: 3'- -GGCgCGCGGUCGGGUAG----GGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 76723 | 0.66 | 0.931859 |
Target: 5'- cCCGCaguGCGCCGGCaaCAUCCgCg -3' miRNA: 3'- -GGCG---CGCGGUCGg-GUAGGgG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 78367 | 0.66 | 0.941976 |
Target: 5'- uCCGCGCccucuucuuuGCCGGCUC-UCCUCc -3' miRNA: 3'- -GGCGCG----------CGGUCGGGuAGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 78530 | 0.69 | 0.83191 |
Target: 5'- aCCGgGCGCCgucaggacguaaaAGaCCCgAUCCCCg -3' miRNA: 3'- -GGCgCGCGG-------------UC-GGG-UAGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | - | 79298 | 0.66 | 0.937047 |
Target: 5'- -gGCGCGUgGGCCCAgCCUg -3' miRNA: 3'- ggCGCGCGgUCGGGUaGGGg -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 80150 | 0.67 | 0.920701 |
Target: 5'- gCCGCGCGauGGCCCcggCCUCg -3' miRNA: 3'- -GGCGCGCggUCGGGua-GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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