miRNA display CGI


Results 41 - 60 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 21812 0.7 0.787033
Target:  5'- gCCGCuGCGCCGcGCCgcCGUCCUCg -3'
miRNA:   3'- -GGCG-CGCGGU-CGG--GUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 64513 0.7 0.787033
Target:  5'- gCCGC-CGCCGcaacGCCCGUgCCCg -3'
miRNA:   3'- -GGCGcGCGGU----CGGGUAgGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 214222 0.7 0.787033
Target:  5'- gCUGCGCGCC--UCCGUCCUCg -3'
miRNA:   3'- -GGCGCGCGGucGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 37466 0.7 0.787033
Target:  5'- aCGCGCGUCGGCCgCGUCgCa -3'
miRNA:   3'- gGCGCGCGGUCGG-GUAGgGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 118286 0.7 0.787033
Target:  5'- cCCGCGUGCCcGCCacuUCCaCCg -3'
miRNA:   3'- -GGCGCGCGGuCGGgu-AGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 194188 0.7 0.796526
Target:  5'- uCCGcCGCGaaaGGCCCccGUCCCCg -3'
miRNA:   3'- -GGC-GCGCgg-UCGGG--UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 198742 0.7 0.796526
Target:  5'- cCCGC-CGCCAGgCCAgUUCCCg -3'
miRNA:   3'- -GGCGcGCGGUCgGGU-AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 41780 0.7 0.796526
Target:  5'- cCUGCugGCGCCGGCgcugCCAUCCUCa -3'
miRNA:   3'- -GGCG--CGCGGUCG----GGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 1520 0.7 0.796526
Target:  5'- uCCGcCGCGaaaGGCCCccGUCCCCg -3'
miRNA:   3'- -GGC-GCGCgg-UCGGG--UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 156851 0.7 0.805856
Target:  5'- uCCGCGUGCgC-GCCCAUCCg- -3'
miRNA:   3'- -GGCGCGCG-GuCGGGUAGGgg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 151793 0.7 0.805856
Target:  5'- gCGCGCGCCcaGGCUCAuggagUCCUCg -3'
miRNA:   3'- gGCGCGCGG--UCGGGU-----AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 129783 0.7 0.805856
Target:  5'- gCGCaGCGCCGGCCauUCUCCg -3'
miRNA:   3'- gGCG-CGCGGUCGGguAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 112498 0.69 0.815015
Target:  5'- uCCuCGCGCCAGCCCccgCCgCg -3'
miRNA:   3'- -GGcGCGCGGUCGGGua-GGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 126073 0.69 0.815015
Target:  5'- gCCGCGUGCCGGaUCCAgcggUCCaCCu -3'
miRNA:   3'- -GGCGCGCGGUC-GGGU----AGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 194362 0.69 0.823993
Target:  5'- cCCGCGaCGC---CCCGUCCCCg -3'
miRNA:   3'- -GGCGC-GCGgucGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 1346 0.69 0.823993
Target:  5'- cCCGCGaCGC---CCCGUCCCCg -3'
miRNA:   3'- -GGCGC-GCGgucGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 197188 0.69 0.823993
Target:  5'- cCUGCcaucGCGCaCGGCgCGUCCCCg -3'
miRNA:   3'- -GGCG----CGCG-GUCGgGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233351 0.69 0.823993
Target:  5'- cCUGCcaucGCGCaCGGCgCGUCCCCg -3'
miRNA:   3'- -GGCG----CGCG-GUCGgGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 78530 0.69 0.83191
Target:  5'- aCCGgGCGCCgucaggacguaaaAGaCCCgAUCCCCg -3'
miRNA:   3'- -GGCgCGCGG-------------UC-GGG-UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 153417 0.69 0.83278
Target:  5'- uCCGCGCGCU-GCUCGUCaCCg -3'
miRNA:   3'- -GGCGCGCGGuCGGGUAGgGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.