miRNA display CGI


Results 21 - 40 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 196355 0.72 0.68546
Target:  5'- gCCGCGCGCCAcacggcGCCCAUggCCUg -3'
miRNA:   3'- -GGCGCGCGGU------CGGGUA--GGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 35002 0.72 0.68546
Target:  5'- gUGCGCGCCGGCCUGUUgugucgcacgCCCg -3'
miRNA:   3'- gGCGCGCGGUCGGGUAG----------GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 31017 0.72 0.68546
Target:  5'- aCCGC-CGCCGGCgCCGUUCUCg -3'
miRNA:   3'- -GGCGcGCGGUCG-GGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 188307 0.72 0.696005
Target:  5'- cCCGCGcCGCCGGCgcugUCAUCgCCCg -3'
miRNA:   3'- -GGCGC-GCGGUCG----GGUAG-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 41604 0.71 0.716909
Target:  5'- aCGCGCGUgGGCCCucaagaAUCCUCa -3'
miRNA:   3'- gGCGCGCGgUCGGG------UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 8646 0.71 0.716909
Target:  5'- uUCGCGcCGCCGGUCCc-CCCCa -3'
miRNA:   3'- -GGCGC-GCGGUCGGGuaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 111584 0.71 0.727248
Target:  5'- gCCGCGCuaugcgGCCAGgCC-UCCCCu -3'
miRNA:   3'- -GGCGCG------CGGUCgGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 190920 0.71 0.727248
Target:  5'- gUCGCGCggcuuguuauacGCUAGCCCGUCgCCg -3'
miRNA:   3'- -GGCGCG------------CGGUCGGGUAGgGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 32004 0.71 0.727248
Target:  5'- cCCGCGCGCCA-CCCA-CCUg -3'
miRNA:   3'- -GGCGCGCGGUcGGGUaGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 67330 0.71 0.727248
Target:  5'- gUCGCGCGCCAGUCgCAUCaCUa -3'
miRNA:   3'- -GGCGCGCGGUCGG-GUAG-GGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 161843 0.71 0.737497
Target:  5'- aCGUGCGCCAGUUCGUCUUUg -3'
miRNA:   3'- gGCGCGCGGUCGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 71801 0.71 0.747646
Target:  5'- gCGCGCGCaCAGCaggCCGUgCCCg -3'
miRNA:   3'- gGCGCGCG-GUCG---GGUAgGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 119426 0.71 0.747646
Target:  5'- gCUGCGCGCCGGUCUcUUUCCa -3'
miRNA:   3'- -GGCGCGCGGUCGGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 189308 0.7 0.757685
Target:  5'- aCGC-CGCCGGUCCGggcCCCCa -3'
miRNA:   3'- gGCGcGCGGUCGGGUa--GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 124909 0.7 0.757685
Target:  5'- uUCGCGaCGCCAccuucaCCAUCCCCg -3'
miRNA:   3'- -GGCGC-GCGGUcg----GGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 87843 0.7 0.767603
Target:  5'- gCCGaCGcCGCCAGCCuCGUCUUCg -3'
miRNA:   3'- -GGC-GC-GCGGUCGG-GUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 74509 0.7 0.777389
Target:  5'- cCCG-GCGCCGGCUCGUCuuuuCCCu -3'
miRNA:   3'- -GGCgCGCGGUCGGGUAG----GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 218316 0.7 0.777389
Target:  5'- aCGCGCGCCuGCCagaugguaaacgCGUCCCa -3'
miRNA:   3'- gGCGCGCGGuCGG------------GUAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 51884 0.7 0.777389
Target:  5'- uCCGCGcCGCCgAGCCUgccGUCgCCCg -3'
miRNA:   3'- -GGCGC-GCGG-UCGGG---UAG-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 179931 0.7 0.787033
Target:  5'- gCgGCGUGCCGGCCaCcgCCCg -3'
miRNA:   3'- -GgCGCGCGGUCGG-GuaGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.