miRNA display CGI


Results 21 - 40 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 64126 0.67 0.908502
Target:  5'- aCGCGCGCUAG-CCGUCUUUg -3'
miRNA:   3'- gGCGCGCGGUCgGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 64224 0.66 0.931859
Target:  5'- aUCGCGCGCUAGCgCCGaugaCCUg -3'
miRNA:   3'- -GGCGCGCGGUCG-GGUag--GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 64516 0.68 0.857915
Target:  5'- cCCGCcCGCCGGCUCgacaucgguGUCCCUg -3'
miRNA:   3'- -GGCGcGCGGUCGGG---------UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 68234 0.67 0.908502
Target:  5'- cCCGCcCGCCgacuuccagcGGCCCGUCUUCa -3'
miRNA:   3'- -GGCGcGCGG----------UCGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 71115 0.66 0.946647
Target:  5'- cCCgGCGcCGCCAGCaCCAguuucgCCUCg -3'
miRNA:   3'- -GG-CGC-GCGGUCG-GGUa-----GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 71801 0.71 0.747646
Target:  5'- gCGCGCGCaCAGCaggCCGUgCCCg -3'
miRNA:   3'- gGCGCGCG-GUCG---GGUAgGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 74509 0.7 0.777389
Target:  5'- cCCG-GCGCCGGCUCGUCuuuuCCCu -3'
miRNA:   3'- -GGCgCGCGGUCGGGUAG----GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 76723 0.66 0.931859
Target:  5'- cCCGCaguGCGCCGGCaaCAUCCgCg -3'
miRNA:   3'- -GGCG---CGCGGUCGg-GUAGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 78367 0.66 0.941976
Target:  5'- uCCGCGCccucuucuuuGCCGGCUC-UCCUCc -3'
miRNA:   3'- -GGCGCG----------CGGUCGGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 78530 0.69 0.83191
Target:  5'- aCCGgGCGCCgucaggacguaaaAGaCCCgAUCCCCg -3'
miRNA:   3'- -GGCgCGCGG-------------UC-GGG-UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 80150 0.67 0.920701
Target:  5'- gCCGCGCGauGGCCCcggCCUCg -3'
miRNA:   3'- -GGCGCGCggUCGGGua-GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 82079 0.78 0.333945
Target:  5'- cCUGCGUGCCAGUCCGUCCguCCa -3'
miRNA:   3'- -GGCGCGCGGUCGGGUAGG--GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 87415 0.68 0.857915
Target:  5'- gCCGC-CGCCGGCUCcUCCgCCu -3'
miRNA:   3'- -GGCGcGCGGUCGGGuAGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 87843 0.7 0.767603
Target:  5'- gCCGaCGcCGCCAGCCuCGUCUUCg -3'
miRNA:   3'- -GGC-GC-GCGGUCGG-GUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 92207 0.67 0.902017
Target:  5'- cCCGCGCGCCuacgGGCgCCAaaCCUg -3'
miRNA:   3'- -GGCGCGCGG----UCG-GGUagGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 94330 0.75 0.516457
Target:  5'- cCCG-GCGCCGGUCCGUCCgCg -3'
miRNA:   3'- -GGCgCGCGGUCGGGUAGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 94398 0.66 0.931859
Target:  5'- aCCGgGCG-CGGCCCG-CUCCg -3'
miRNA:   3'- -GGCgCGCgGUCGGGUaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 94565 0.69 0.83278
Target:  5'- cCCGgGCuCCGGCCCGggaUCCCUc -3'
miRNA:   3'- -GGCgCGcGGUCGGGU---AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 94654 0.66 0.931859
Target:  5'- uCCGCGC-CCuuCCCcUCCCCc -3'
miRNA:   3'- -GGCGCGcGGucGGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 95088 0.67 0.908502
Target:  5'- cCUGgGCGUUGGCCgGUCCCg -3'
miRNA:   3'- -GGCgCGCGGUCGGgUAGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.