miRNA display CGI


Results 1 - 20 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 169 0.67 0.92641
Target:  5'- aCGCGCGUCuguGUCUguuugaGUCCCCa -3'
miRNA:   3'- gGCGCGCGGu--CGGG------UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 1679 0.69 0.849749
Target:  5'- gCGCaGCGCuCGGCuaccCCGUCCCCc -3'
miRNA:   3'- gGCG-CGCG-GUCG----GGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 22336 0.68 0.887574
Target:  5'- gCCGCGacuccgaCGUCGGuCCCAUCgCCCa -3'
miRNA:   3'- -GGCGC-------GCGGUC-GGGUAG-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 31079 0.66 0.931859
Target:  5'- uUCGCGCucaCCAGCCuCGUcgaCCCCg -3'
miRNA:   3'- -GGCGCGc--GGUCGG-GUA---GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 31894 0.69 0.841368
Target:  5'- cCUGCGUcuGCUGGCCUGUCCCg -3'
miRNA:   3'- -GGCGCG--CGGUCGGGUAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 32004 0.71 0.727248
Target:  5'- cCCGCGCGCCA-CCCA-CCUg -3'
miRNA:   3'- -GGCGCGCGGUcGGGUaGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 33075 0.68 0.888287
Target:  5'- gUGCGCGCCuGCUCGUCaucgCCg -3'
miRNA:   3'- gGCGCGCGGuCGGGUAGg---GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 33352 0.73 0.609779
Target:  5'- gCCGCGUGCgauccugCGGCgCGUCCCCg -3'
miRNA:   3'- -GGCGCGCG-------GUCGgGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 34102 0.66 0.951063
Target:  5'- aCCGcCGuCGUCGcGCCCGUCgCCg -3'
miRNA:   3'- -GGC-GC-GCGGU-CGGGUAGgGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 36338 0.68 0.868972
Target:  5'- -aGCaGCGCCAGCCCcacgcgcacgaagCCCCu -3'
miRNA:   3'- ggCG-CGCGGUCGGGua-----------GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 37076 0.67 0.928621
Target:  5'- aCUGCGaggGCCAGCCCAgcgacacgcacgagCCCUc -3'
miRNA:   3'- -GGCGCg--CGGUCGGGUa-------------GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 38390 0.66 0.941976
Target:  5'- aCCGC-CGCC-GUCCGUCgCCg -3'
miRNA:   3'- -GGCGcGCGGuCGGGUAGgGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 41369 0.68 0.865858
Target:  5'- uUCGCGCgGCCAGUUggcgggguucaUAUCCCCg -3'
miRNA:   3'- -GGCGCG-CGGUCGG-----------GUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 45350 0.74 0.537028
Target:  5'- gCGCGCGCCGGCCgAacuggacCCCCa -3'
miRNA:   3'- gGCGCGCGGUCGGgUa------GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 45403 0.66 0.937047
Target:  5'- uCCGCuGcCGCCugcAGCCCAgUCUCCg -3'
miRNA:   3'- -GGCG-C-GCGG---UCGGGU-AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 47502 0.66 0.951063
Target:  5'- gCCGCGCGaggcCCAGCUCgAUCUCg -3'
miRNA:   3'- -GGCGCGC----GGUCGGG-UAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 56574 0.66 0.946647
Target:  5'- gCCGC-CGCC-GCCCgAUCCaCCu -3'
miRNA:   3'- -GGCGcGCGGuCGGG-UAGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 57697 0.68 0.888287
Target:  5'- gCCGCaGCGCCAGCgUCGgcggCUCCg -3'
miRNA:   3'- -GGCG-CGCGGUCG-GGUa---GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 57860 0.66 0.946647
Target:  5'- gCCGCGCcgaGCCAGCggGcCCCCg -3'
miRNA:   3'- -GGCGCG---CGGUCGggUaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 58082 0.66 0.941976
Target:  5'- aCUGCGuCGCCuuGCCC-UCCUCc -3'
miRNA:   3'- -GGCGC-GCGGu-CGGGuAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.