miRNA display CGI


Results 1 - 20 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 104596 1.01 0.011334
Target:  5'- gCCGCGCGCCAGCCCAUCCCCc -3'
miRNA:   3'- -GGCGCGCGGUCGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 143410 0.8 0.275373
Target:  5'- gCgGCGCGCCGuGCCCGUCUCCu -3'
miRNA:   3'- -GgCGCGCGGU-CGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 82079 0.78 0.333945
Target:  5'- cCUGCGUGCCAGUCCGUCCguCCa -3'
miRNA:   3'- -GGCGCGCGGUCGGGUAGG--GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 155204 0.78 0.366482
Target:  5'- aCGCGCGCCAGCUCAcgcaacaucUCCUCg -3'
miRNA:   3'- gGCGCGCGGUCGGGU---------AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 116234 0.77 0.401138
Target:  5'- aCGCGCGCC-GCCCGUCUCa -3'
miRNA:   3'- gGCGCGCGGuCGGGUAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 140988 0.76 0.42846
Target:  5'- aCCGCacaaGCGCCGGCCCcgCCgCCg -3'
miRNA:   3'- -GGCG----CGCGGUCGGGuaGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 211439 0.75 0.486221
Target:  5'- cCCGcCGCGCCGG-CCGUCUCCa -3'
miRNA:   3'- -GGC-GCGCGGUCgGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 196894 0.75 0.496209
Target:  5'- aCCGuCGUGCCGGCCCA-CCgCCg -3'
miRNA:   3'- -GGC-GCGCGGUCGGGUaGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233644 0.75 0.496209
Target:  5'- aCCGuCGUGCCGGCCCA-CCgCCg -3'
miRNA:   3'- -GGC-GCGCGGUCGGGUaGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 94330 0.75 0.516457
Target:  5'- cCCG-GCGCCGGUCCGUCCgCg -3'
miRNA:   3'- -GGCgCGCGGUCGGGUAGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 45350 0.74 0.537028
Target:  5'- gCGCGCGCCGGCCgAacuggacCCCCa -3'
miRNA:   3'- gGCGCGCGGUCGGgUa------GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 106751 0.74 0.547421
Target:  5'- gCUGgGCGUCAGCCUcuauAUCCCCg -3'
miRNA:   3'- -GGCgCGCGGUCGGG----UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 102837 0.74 0.568387
Target:  5'- -gGCGCGCCGGCCgCGUCCa- -3'
miRNA:   3'- ggCGCGCGGUCGG-GUAGGgg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 119988 0.73 0.589549
Target:  5'- gCCuuuCGCGCCGGCgCCAUCCCg -3'
miRNA:   3'- -GGc--GCGCGGUCG-GGUAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 94644 0.73 0.600185
Target:  5'- gCCGCGCccggugcCCGGCCCAcggCCCCg -3'
miRNA:   3'- -GGCGCGc------GGUCGGGUa--GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 33352 0.73 0.609779
Target:  5'- gCCGCGUGCgauccugCGGCgCGUCCCCg -3'
miRNA:   3'- -GGCGCGCG-------GUCGgGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 211399 0.73 0.610846
Target:  5'- aCCGCGgGCC-GCCCAaacaucuaaaagUCCCCc -3'
miRNA:   3'- -GGCGCgCGGuCGGGU------------AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 95117 0.73 0.621524
Target:  5'- gCCgGgGCGUC-GCCCGUCCCCa -3'
miRNA:   3'- -GG-CgCGCGGuCGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 132954 0.72 0.664236
Target:  5'- aCCGuCGCGCCaccguAGCCUAcuacUCCCCa -3'
miRNA:   3'- -GGC-GCGCGG-----UCGGGU----AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 196355 0.72 0.68546
Target:  5'- gCCGCGCGCCAcacggcGCCCAUggCCUg -3'
miRNA:   3'- -GGCGCGCGGU------CGGGUA--GGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.