miRNA display CGI


Results 1 - 20 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 234569 0.69 0.841368
Target:  5'- cCCGCGgGCC-GCCgGgcgCCCCu -3'
miRNA:   3'- -GGCGCgCGGuCGGgUa--GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 233224 0.66 0.951063
Target:  5'- gCCGCGCGgCGGCUgcUgCCCg -3'
miRNA:   3'- -GGCGCGCgGUCGGguAgGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 214222 0.7 0.787033
Target:  5'- gCUGCGCGCC--UCCGUCCUCg -3'
miRNA:   3'- -GGCGCGCGGucGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 213213 0.68 0.857915
Target:  5'- gUGCGCcaacggcauaguGCCAGCCCuAUCCuCCa -3'
miRNA:   3'- gGCGCG------------CGGUCGGG-UAGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 211439 0.75 0.486221
Target:  5'- cCCGcCGCGCCGG-CCGUCUCCa -3'
miRNA:   3'- -GGC-GCGCGGUCgGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 211399 0.73 0.610846
Target:  5'- aCCGCGgGCC-GCCCAaacaucuaaaagUCCCCc -3'
miRNA:   3'- -GGCGCgCGGuCGGGU------------AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 210966 0.68 0.857915
Target:  5'- cCCGCGCuGCCGucGUCCGUUCCg -3'
miRNA:   3'- -GGCGCG-CGGU--CGGGUAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 210887 0.68 0.888287
Target:  5'- aCGUGUGCCuGCCaggagCCCCg -3'
miRNA:   3'- gGCGCGCGGuCGGgua--GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 209062 0.67 0.902017
Target:  5'- cCUGUGCGCCAcagcGCCCAUCggcguuUCCa -3'
miRNA:   3'- -GGCGCGCGGU----CGGGUAG------GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 204958 0.67 0.925851
Target:  5'- gCCGCgGUGCCGGCggcuaugauccugUgGUCCCCg -3'
miRNA:   3'- -GGCG-CGCGGUCG-------------GgUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 197531 0.66 0.946647
Target:  5'- cUCGCGCcCCAGCgCCAgcgCgCCCa -3'
miRNA:   3'- -GGCGCGcGGUCG-GGUa--G-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 197500 0.67 0.895277
Target:  5'- cCCGCGCGCagaaagugcgaCAGCUCcgCCgCCa -3'
miRNA:   3'- -GGCGCGCG-----------GUCGGGuaGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 197428 0.66 0.946647
Target:  5'- aCgGCGC-CCAGCUCGUCCa- -3'
miRNA:   3'- -GgCGCGcGGUCGGGUAGGgg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 197393 0.66 0.941976
Target:  5'- -gGCGCG-CGGCaCgGUCCCCg -3'
miRNA:   3'- ggCGCGCgGUCG-GgUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 197188 0.69 0.823993
Target:  5'- cCUGCcaucGCGCaCGGCgCGUCCCCg -3'
miRNA:   3'- -GGCG----CGCG-GUCGgGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 197113 0.68 0.88105
Target:  5'- cCCGU-CGCCGGCCCcgCCgCg -3'
miRNA:   3'- -GGCGcGCGGUCGGGuaGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 197068 0.66 0.951063
Target:  5'- aCCGCgcccaGCGCCAGCCag-CCgCa -3'
miRNA:   3'- -GGCG-----CGCGGUCGGguaGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 196894 0.75 0.496209
Target:  5'- aCCGuCGUGCCGGCCCA-CCgCCg -3'
miRNA:   3'- -GGC-GCGCGGUCGGGUaGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 196795 0.66 0.931859
Target:  5'- gUCGCGCGCgGgguGCCCAcgCCCa -3'
miRNA:   3'- -GGCGCGCGgU---CGGGUa-GGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 196355 0.72 0.68546
Target:  5'- gCCGCGCGCCAcacggcGCCCAUggCCUg -3'
miRNA:   3'- -GGCGCGCGGU------CGGGUA--GGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.