miRNA display CGI


Results 21 - 40 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 195539 0.67 0.92641
Target:  5'- aCGCGCGUCuguGUCUguuugaGUCCCCa -3'
miRNA:   3'- gGCGCGCGGu--CGGG------UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 189308 0.7 0.757685
Target:  5'- aCGC-CGCCGGUCCGggcCCCCa -3'
miRNA:   3'- gGCGcGCGGUCGGGUa--GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 188307 0.72 0.696005
Target:  5'- cCCGCGcCGCCGGCgcugUCAUCgCCCg -3'
miRNA:   3'- -GGCGC-GCGGUCG----GGUAG-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 167898 0.66 0.946647
Target:  5'- gCCGC-CGCucaCAGUCUAUCCCUa -3'
miRNA:   3'- -GGCGcGCG---GUCGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 166186 0.69 0.841368
Target:  5'- gCGUGCGCCAGUcgucugucUCAUUCCCc -3'
miRNA:   3'- gGCGCGCGGUCG--------GGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 155204 0.78 0.366482
Target:  5'- aCGCGCGCCAGCUCAcgcaacaucUCCUCg -3'
miRNA:   3'- gGCGCGCGGUCGGGU---------AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 149080 0.67 0.92641
Target:  5'- aUCGC-CGCCGGCCgGUCgCUCg -3'
miRNA:   3'- -GGCGcGCGGUCGGgUAG-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 145337 0.67 0.908502
Target:  5'- gCCGC-CGCCAGCggCGUCgCCCg -3'
miRNA:   3'- -GGCGcGCGGUCGg-GUAG-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 144717 0.66 0.931859
Target:  5'- gCCgGCGCGCgAGCCCGUguagugcgagCCgCCg -3'
miRNA:   3'- -GG-CGCGCGgUCGGGUA----------GG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 143410 0.8 0.275373
Target:  5'- gCgGCGCGCCGuGCCCGUCUCCu -3'
miRNA:   3'- -GgCGCGCGGU-CGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 143074 0.66 0.941976
Target:  5'- aCCGCgGUGCaC-GCCCGUgCCCa -3'
miRNA:   3'- -GGCG-CGCG-GuCGGGUAgGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 140988 0.76 0.42846
Target:  5'- aCCGCacaaGCGCCGGCCCcgCCgCCg -3'
miRNA:   3'- -GGCG----CGCGGUCGGGuaGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 132954 0.72 0.664236
Target:  5'- aCCGuCGCGCCaccguAGCCUAcuacUCCCCa -3'
miRNA:   3'- -GGC-GCGCGG-----UCGGGU----AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 130480 0.66 0.931859
Target:  5'- gCGCgGCGCCgcGGCCUcgCCCa -3'
miRNA:   3'- gGCG-CGCGG--UCGGGuaGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 129783 0.7 0.805856
Target:  5'- gCGCaGCGCCGGCCauUCUCCg -3'
miRNA:   3'- gGCG-CGCGGUCGGguAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 124909 0.7 0.757685
Target:  5'- uUCGCGaCGCCAccuucaCCAUCCCCg -3'
miRNA:   3'- -GGCGC-GCGGUcg----GGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 123345 0.67 0.895277
Target:  5'- aCCGagGCGCCAGCCgA-CCCa -3'
miRNA:   3'- -GGCg-CGCGGUCGGgUaGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 122311 0.67 0.914731
Target:  5'- aCGCGUgaGCCAGCCCucgcugAUCCUg -3'
miRNA:   3'- gGCGCG--CGGUCGGG------UAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 120108 0.67 0.902017
Target:  5'- gCGCGCGCCA--UCAUCCgCCg -3'
miRNA:   3'- gGCGCGCGGUcgGGUAGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 119988 0.73 0.589549
Target:  5'- gCCuuuCGCGCCGGCgCCAUCCCg -3'
miRNA:   3'- -GGc--GCGCGGUCG-GGUAGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.