miRNA display CGI


Results 21 - 40 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 34102 0.66 0.951063
Target:  5'- aCCGcCGuCGUCGcGCCCGUCgCCg -3'
miRNA:   3'- -GGC-GC-GCGGU-CGGGUAGgGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 35002 0.72 0.68546
Target:  5'- gUGCGCGCCGGCCUGUUgugucgcacgCCCg -3'
miRNA:   3'- gGCGCGCGGUCGGGUAG----------GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 36338 0.68 0.868972
Target:  5'- -aGCaGCGCCAGCCCcacgcgcacgaagCCCCu -3'
miRNA:   3'- ggCG-CGCGGUCGGGua-----------GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 37076 0.67 0.928621
Target:  5'- aCUGCGaggGCCAGCCCAgcgacacgcacgagCCCUc -3'
miRNA:   3'- -GGCGCg--CGGUCGGGUa-------------GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 37466 0.7 0.787033
Target:  5'- aCGCGCGUCGGCCgCGUCgCa -3'
miRNA:   3'- gGCGCGCGGUCGG-GUAGgGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 38390 0.66 0.941976
Target:  5'- aCCGC-CGCC-GUCCGUCgCCg -3'
miRNA:   3'- -GGCGcGCGGuCGGGUAGgGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 38397 0.66 0.946191
Target:  5'- aCCGCGUcggccucGCCGGCCCGagcgCgCCg -3'
miRNA:   3'- -GGCGCG-------CGGUCGGGUa---GgGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 38444 0.68 0.865858
Target:  5'- gCCGCgGCGCgGGCUCGgcgUCCCg -3'
miRNA:   3'- -GGCG-CGCGgUCGGGUa--GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 38508 0.69 0.841368
Target:  5'- aCCGC-CGUCGuuGCCgGUCCCCg -3'
miRNA:   3'- -GGCGcGCGGU--CGGgUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 40087 0.66 0.941976
Target:  5'- gCCGcCGCGCCAcacGCUgAgCCCCg -3'
miRNA:   3'- -GGC-GCGCGGU---CGGgUaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 41369 0.68 0.865858
Target:  5'- uUCGCGCgGCCAGUUggcgggguucaUAUCCCCg -3'
miRNA:   3'- -GGCGCG-CGGUCGG-----------GUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 41604 0.71 0.716909
Target:  5'- aCGCGCGUgGGCCCucaagaAUCCUCa -3'
miRNA:   3'- gGCGCGCGgUCGGG------UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 41780 0.7 0.796526
Target:  5'- cCUGCugGCGCCGGCgcugCCAUCCUCa -3'
miRNA:   3'- -GGCG--CGCGGUCG----GGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 41864 0.66 0.951063
Target:  5'- aCCGagacgaGCGCCAaaccGCCCGUCaCCa -3'
miRNA:   3'- -GGCg-----CGCGGU----CGGGUAGgGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 45350 0.74 0.537028
Target:  5'- gCGCGCGCCGGCCgAacuggacCCCCa -3'
miRNA:   3'- gGCGCGCGGUCGGgUa------GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 45403 0.66 0.937047
Target:  5'- uCCGCuGcCGCCugcAGCCCAgUCUCCg -3'
miRNA:   3'- -GGCG-C-GCGG---UCGGGU-AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 47502 0.66 0.951063
Target:  5'- gCCGCGCGaggcCCAGCUCgAUCUCg -3'
miRNA:   3'- -GGCGCGC----GGUCGGG-UAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 51884 0.7 0.777389
Target:  5'- uCCGCGcCGCCgAGCCUgccGUCgCCCg -3'
miRNA:   3'- -GGCGC-GCGG-UCGGG---UAG-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 56542 0.67 0.908502
Target:  5'- cCCGCG-GCCGuaCCcgCCCCa -3'
miRNA:   3'- -GGCGCgCGGUcgGGuaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 56574 0.66 0.946647
Target:  5'- gCCGC-CGCC-GCCCgAUCCaCCu -3'
miRNA:   3'- -GGCGcGCGGuCGGG-UAGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.