Results 1 - 20 of 36 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 118407 | 0.66 | 0.999987 |
Target: 5'- cCAGUgAAUgucaCCGUGGUUGUGUu -3' miRNA: 3'- uGUCGgUUGa---GGUACCAAUACA- -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | - | 99602 | 0.66 | 0.999981 |
Target: 5'- gACAuGCaGACUCCA-GGUUAUGa -3' miRNA: 3'- -UGU-CGgUUGAGGUaCCAAUACa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | - | 59010 | 0.66 | 0.99995 |
Target: 5'- gACGuGcCCAGCUCCGUGGUccUGa -3' miRNA: 3'- -UGU-C-GGUUGAGGUACCAauACa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 162535 | 0.67 | 0.999837 |
Target: 5'- gACAGCC-GCUCCAgcaGGUUcUGg -3' miRNA: 3'- -UGUCGGuUGAGGUa--CCAAuACa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 141926 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 143047 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142945 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142843 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142741 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142640 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142538 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142436 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142334 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142232 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142130 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142028 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 141111 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 43825 | 0.68 | 0.999786 |
Target: 5'- cACGGCCAGCUCguagGUGGggccUAUGUu -3' miRNA: 3'- -UGUCGGUUGAGg---UACCa---AUACA- -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 127720 | 0.68 | 0.999786 |
Target: 5'- --cGCCuuCUCCAUGGUUGaGUc -3' miRNA: 3'- uguCGGuuGAGGUACCAAUaCA- -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 140805 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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