Results 41 - 60 of 85 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 12758 | 0.67 | 0.997526 |
Target: 5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3' miRNA: 3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 104524 | 0.67 | 0.997526 |
Target: 5'- gAGACCAUGCuCAGugGCCgucugGCAGGGg -3' miRNA: 3'- -UUUGGUGUG-GUUugUGG-----UGUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 15827 | 0.67 | 0.997526 |
Target: 5'- --cCCGCGCCuGGCGCCuccuCGGGGc -3' miRNA: 3'- uuuGGUGUGGuUUGUGGu---GUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 50631 | 0.67 | 0.997032 |
Target: 5'- -uGCUGCGCCGGcggcCACCACGGGc -3' miRNA: 3'- uuUGGUGUGGUUu---GUGGUGUCCu -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 137387 | 0.67 | 0.997032 |
Target: 5'- cAGCC-CGCCAGcCACCccagACAGGAg -3' miRNA: 3'- uUUGGuGUGGUUuGUGG----UGUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 74341 | 0.67 | 0.997032 |
Target: 5'- -uGCuCACACUGAGCgcuaagaaacaGCCACAGGGg -3' miRNA: 3'- uuUG-GUGUGGUUUG-----------UGGUGUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 133984 | 0.67 | 0.997032 |
Target: 5'- cGGCCGCGCUGAACguGCC-CGGGGc -3' miRNA: 3'- uUUGGUGUGGUUUG--UGGuGUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 43110 | 0.68 | 0.99646 |
Target: 5'- ---aCACACUucccguuaGAACACCACAGGc -3' miRNA: 3'- uuugGUGUGG--------UUUGUGGUGUCCu -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 159266 | 0.68 | 0.99646 |
Target: 5'- uGGCuCGCugCuguGACGCCGCAGGu -3' miRNA: 3'- uUUG-GUGugGu--UUGUGGUGUCCu -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 60037 | 0.68 | 0.995799 |
Target: 5'- -uGCCGCGCCAGAgACCACc--- -3' miRNA: 3'- uuUGGUGUGGUUUgUGGUGuccu -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 105861 | 0.68 | 0.995042 |
Target: 5'- cGGCCuucugGCACCGGGCGCCACAcagcgaGGGu -3' miRNA: 3'- uUUGG-----UGUGGUUUGUGGUGU------CCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 147319 | 0.68 | 0.995042 |
Target: 5'- cGACCACACCuuugaGGACACCu--GGAg -3' miRNA: 3'- uUUGGUGUGG-----UUUGUGGuguCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 167249 | 0.68 | 0.99496 |
Target: 5'- cAAGCCACACCuAACucauGCCagcagagGCAGGAa -3' miRNA: 3'- -UUUGGUGUGGuUUG----UGG-------UGUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 63790 | 0.68 | 0.994177 |
Target: 5'- -cGCCACcCCcGGCGCCGCcGGAg -3' miRNA: 3'- uuUGGUGuGGuUUGUGGUGuCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 60158 | 0.68 | 0.994177 |
Target: 5'- --cCCGCAcCCAGGCGgcuuCCGCAGGGg -3' miRNA: 3'- uuuGGUGU-GGUUUGU----GGUGUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 41406 | 0.68 | 0.994177 |
Target: 5'- -cACCACGCUggagGGACAuuguCCACGGGAc -3' miRNA: 3'- uuUGGUGUGG----UUUGU----GGUGUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 10884 | 0.68 | 0.994177 |
Target: 5'- cGAGCCGCccggcucCCGGACGCUugAGGGc -3' miRNA: 3'- -UUUGGUGu------GGUUUGUGGugUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | - | 136123 | 0.68 | 0.994177 |
Target: 5'- -uGCCGCGCCGAcgACC-CAGGGc -3' miRNA: 3'- uuUGGUGUGGUUugUGGuGUCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 113966 | 0.69 | 0.993194 |
Target: 5'- ---gCAUACCAGGCACCACcccgucccaguGGGAu -3' miRNA: 3'- uuugGUGUGGUUUGUGGUG-----------UCCU- -5' |
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MIMAT0003423 | ebv-miR-BART12 | -47.1 | NC_007605.1 | + | 159341 | 0.69 | 0.992083 |
Target: 5'- uAGACCACGuccccCCAGACGCgcaggCACAGGGu -3' miRNA: 3'- -UUUGGUGU-----GGUUUGUG-----GUGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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