Results 1 - 20 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 35480 | 1.02 | 0.01709 |
Target: 5'- cAACCCCGGGGCUGAUCAGGUUAa -3' miRNA: 3'- -UUGGGGCCCCGACUAGUCCAAU- -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 116041 | 0.76 | 0.57451 |
Target: 5'- cACCCCGGGGUggccaugacggUGGUCAGGa-- -3' miRNA: 3'- uUGGGGCCCCG-----------ACUAGUCCaau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 99555 | 0.76 | 0.58545 |
Target: 5'- -cCCCCGGGGCagaGAUCGGGg-- -3' miRNA: 3'- uuGGGGCCCCGa--CUAGUCCaau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 169299 | 0.73 | 0.759166 |
Target: 5'- -gUCCCGGGGCggggGGUCGGGc-- -3' miRNA: 3'- uuGGGGCCCCGa---CUAGUCCaau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 170230 | 0.73 | 0.759166 |
Target: 5'- -gUCCCGGGGCggggGGUCGGGc-- -3' miRNA: 3'- uuGGGGCCCCGa---CUAGUCCaau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 168367 | 0.73 | 0.759166 |
Target: 5'- -gUCCCGGGGCggggGGUCGGGc-- -3' miRNA: 3'- uuGGGGCCCCGa---CUAGUCCaau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 167435 | 0.73 | 0.759166 |
Target: 5'- -gUCCCGGGGCggggGGUCGGGc-- -3' miRNA: 3'- uuGGGGCCCCGa---CUAGUCCaau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 127954 | 0.72 | 0.799176 |
Target: 5'- cGugCCCGGGGCgGAgggCAGGg-- -3' miRNA: 3'- -UugGGGCCCCGaCUa--GUCCaau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 152837 | 0.72 | 0.769394 |
Target: 5'- cAGCCUgGGGaGCgugGGUCAGGUUAu -3' miRNA: 3'- -UUGGGgCCC-CGa--CUAGUCCAAU- -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 5238 | 0.72 | 0.779479 |
Target: 5'- cGGCCUCGGGGCUG-UgGGGUc- -3' miRNA: 3'- -UUGGGGCCCCGACuAgUCCAau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 168815 | 0.72 | 0.808767 |
Target: 5'- gAGCCCCGGGGCgGccCGGGg-- -3' miRNA: 3'- -UUGGGGCCCCGaCuaGUCCaau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 167883 | 0.72 | 0.808767 |
Target: 5'- gAGCCCCGGGGCgGccCGGGg-- -3' miRNA: 3'- -UUGGGGCCCCGaCuaGUCCaau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 169747 | 0.72 | 0.808767 |
Target: 5'- gAGCCCCGGGGCgGccCGGGg-- -3' miRNA: 3'- -UUGGGGCCCCGaCuaGUCCaau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 35131 | 0.71 | 0.853719 |
Target: 5'- cACCCCGGGGUgcuggGGUgGGGg-- -3' miRNA: 3'- uUGGGGCCCCGa----CUAgUCCaau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 44456 | 0.71 | 0.853719 |
Target: 5'- cACCCCGGGGCccg-CAGGg-- -3' miRNA: 3'- uUGGGGCCCCGacuaGUCCaau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 138961 | 0.71 | 0.853719 |
Target: 5'- cACCCCGGGGUgcuggGGUgGGGg-- -3' miRNA: 3'- uUGGGGCCCCGa----CUAgUCCaau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 148693 | 0.7 | 0.877962 |
Target: 5'- uGGCCCCGGGGUccaccguggUGAccCAGGUg- -3' miRNA: 3'- -UUGGGGCCCCG---------ACUa-GUCCAau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 94178 | 0.7 | 0.885541 |
Target: 5'- uGACCgCGGGGCUGcagcCGGGUg- -3' miRNA: 3'- -UUGGgGCCCCGACua--GUCCAau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | - | 152248 | 0.7 | 0.870127 |
Target: 5'- aGACCCCGGGcGCUGc-CGGGg-- -3' miRNA: 3'- -UUGGGGCCC-CGACuaGUCCaau -5' |
|||||||
MIMAT0003427 | rlcv-miR-rL1-1 | -50.7 | NC_006146.1 | + | 35324 | 0.69 | 0.9132 |
Target: 5'- uAACUCCGGGcCUGAagAGGUUGa -3' miRNA: 3'- -UUGGGGCCCcGACUagUCCAAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home