miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 158464 0.66 0.980776
Target:  5'- --aCCCGGGGCUGGgcCAGaGUc- -3'
miRNA:   3'- uugGGGCCCCGACUa-GUC-CAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 157468 0.68 0.941578
Target:  5'- cACCCUGGGGCUGAcgaUCAa---- -3'
miRNA:   3'- uUGGGGCCCCGACU---AGUccaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 152837 0.72 0.769394
Target:  5'- cAGCCUgGGGaGCgugGGUCAGGUUAu -3'
miRNA:   3'- -UUGGGgCCC-CGa--CUAGUCCAAU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 152248 0.7 0.870127
Target:  5'- aGACCCCGGGcGCUGc-CGGGg-- -3'
miRNA:   3'- -UUGGGGCCC-CGACuaGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 151147 0.66 0.982957
Target:  5'- -cUCCCuGGGCaGAUCAGGg-- -3'
miRNA:   3'- uuGGGGcCCCGaCUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 148693 0.7 0.877962
Target:  5'- uGGCCCCGGGGUccaccguggUGAccCAGGUg- -3'
miRNA:   3'- -UUGGGGCCCCG---------ACUa-GUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 138961 0.71 0.853719
Target:  5'- cACCCCGGGGUgcuggGGUgGGGg-- -3'
miRNA:   3'- uUGGGGCCCCGa----CUAgUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 129825 0.68 0.946423
Target:  5'- gAGCCgaCCGGGGC--GUCAGGUa- -3'
miRNA:   3'- -UUGG--GGCCCCGacUAGUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 128137 0.67 0.96665
Target:  5'- cGCCCCGGGcacGCUGAgcgCGGaGUUu -3'
miRNA:   3'- uUGGGGCCC---CGACUa--GUC-CAAu -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 116532 0.69 0.919431
Target:  5'- cGCCCCaccguGGGCaUGAUCAGGg-- -3'
miRNA:   3'- uUGGGGc----CCCG-ACUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 116041 0.76 0.57451
Target:  5'- cACCCCGGGGUggccaugacggUGGUCAGGa-- -3'
miRNA:   3'- uUGGGGCCCCG-----------ACUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 113537 0.68 0.955299
Target:  5'- cGCUaCUGGGGCUGAUCAGc--- -3'
miRNA:   3'- uUGG-GGCCCCGACUAGUCcaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 110232 0.68 0.956947
Target:  5'- uAUCCCGGGGgucacgaggccaucuUUGAUCAGGa-- -3'
miRNA:   3'- uUGGGGCCCC---------------GACUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 94178 0.7 0.885541
Target:  5'- uGACCgCGGGGCUGcagcCGGGUg- -3'
miRNA:   3'- -UUGGgGCCCCGACua--GUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 80472 0.66 0.975797
Target:  5'- cGCCCCGGGGa-GGUaGGGUg- -3'
miRNA:   3'- uUGGGGCCCCgaCUAgUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 64450 0.67 0.963121
Target:  5'- uGCUgCGGccGGCUGGUCAGGg-- -3'
miRNA:   3'- uUGGgGCC--CCGACUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 57287 0.66 0.984947
Target:  5'- -gUCgCGGGGCUGucguacagCAGGUUGg -3'
miRNA:   3'- uuGGgGCCCCGACua------GUCCAAU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 46470 0.67 0.969934
Target:  5'- cGCCaCCGGGGCUcaaaacGUCGGGg-- -3'
miRNA:   3'- uUGG-GGCCCCGAc-----UAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 44456 0.71 0.853719
Target:  5'- cACCCCGGGGCccg-CAGGg-- -3'
miRNA:   3'- uUGGGGCCCCGacuaGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 35480 1.02 0.01709
Target:  5'- cAACCCCGGGGCUGAUCAGGUUAa -3'
miRNA:   3'- -UUGGGGCCCCGACUAGUCCAAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.