miRNA display CGI


Results 21 - 25 of 25 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003444 rlcv-miR-rL1-14-5p -52.6 NC_006146.1 - 96536 0.67 0.941835
Target:  5'- -aCAGGCGCugcACCGGGCUGU-CGAa -3'
miRNA:   3'- uaGUUCGCG---UGGUCUGGCAgGCU- -5'
MIMAT0003444 rlcv-miR-rL1-14-5p -52.6 NC_006146.1 + 57985 0.66 0.951033
Target:  5'- -cCAGGCGCACCAGgacgaGCUGgaggcCCGGg -3'
miRNA:   3'- uaGUUCGCGUGGUC-----UGGCa----GGCU- -5'
MIMAT0003444 rlcv-miR-rL1-14-5p -52.6 NC_006146.1 + 56796 0.66 0.962915
Target:  5'- --uGAGCGCGgCGG-CCGUCUGGc -3'
miRNA:   3'- uagUUCGCGUgGUCuGGCAGGCU- -5'
MIMAT0003444 rlcv-miR-rL1-14-5p -52.6 NC_006146.1 - 94713 0.66 0.958819
Target:  5'- --aGGGCGCGCCgggggagGGACCGggggcgCCGAc -3'
miRNA:   3'- uagUUCGCGUGG-------UCUGGCa-----GGCU- -5'
MIMAT0003444 rlcv-miR-rL1-14-5p -52.6 NC_006146.1 - 150314 0.66 0.946564
Target:  5'- cAUCAAGUGCACguGcaacGCCGUCUa- -3'
miRNA:   3'- -UAGUUCGCGUGguC----UGGCAGGcu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.