miRNA display CGI


Results 21 - 25 of 25 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003444 rlcv-miR-rL1-14-5p -52.6 NC_006146.1 + 50304 0.74 0.584518
Target:  5'- uGUCAGGCGcCGCCGGGCCuuGUCCa- -3'
miRNA:   3'- -UAGUUCGC-GUGGUCUGG--CAGGcu -5'
MIMAT0003444 rlcv-miR-rL1-14-5p -52.6 NC_006146.1 - 138010 0.76 0.470476
Target:  5'- -cCAGGUGCACCGGACCGgcggacccCCGAa -3'
miRNA:   3'- uaGUUCGCGUGGUCUGGCa-------GGCU- -5'
MIMAT0003444 rlcv-miR-rL1-14-5p -52.6 NC_006146.1 - 48409 0.77 0.441299
Target:  5'- -cCAGGCGCGCCAGGCCcUCCa- -3'
miRNA:   3'- uaGUUCGCGUGGUCUGGcAGGcu -5'
MIMAT0003444 rlcv-miR-rL1-14-5p -52.6 NC_006146.1 - 142891 1.01 0.013856
Target:  5'- cAUCAAGCGCACCAGACCGUCCGAc -3'
miRNA:   3'- -UAGUUCGCGUGGUCUGGCAGGCU- -5'
MIMAT0003444 rlcv-miR-rL1-14-5p -52.6 NC_006146.1 - 143083 1.01 0.013856
Target:  5'- cAUCAAGCGCACCAGACCGUCCGAc -3'
miRNA:   3'- -UAGUUCGCGUGGUCUGGCAGGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.