miRNA display CGI


Results 1 - 20 of 43 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 131697 0.67 1
Target:  5'- gCUGUCuuuGGGGACcuGACCAUUg -3'
miRNA:   3'- -GAUAGuu-CCUUUGuuUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 129775 0.67 1
Target:  5'- aCUGUCAAGGGcauGCAAucCUACg -3'
miRNA:   3'- -GAUAGUUCCUu--UGUUuuGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 140426 0.7 1
Target:  5'- uCUAUCAgaauaacagGGGAAGCAAGGCCcccuGCUu -3'
miRNA:   3'- -GAUAGU---------UCCUUUGUUUUGG----UGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 125726 0.67 1
Target:  5'- -gGUCccuAGGAAGCGAcgcggGACCACg -3'
miRNA:   3'- gaUAGu--UCCUUUGUU-----UUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 125559 0.66 1
Target:  5'- -gGUCAGGGuGGGCAGagGACCAUa -3'
miRNA:   3'- gaUAGUUCC-UUUGUU--UUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 128795 0.66 1
Target:  5'- aCUGUCAuGGAAAUugcGGGCCugUa -3'
miRNA:   3'- -GAUAGUuCCUUUGu--UUUGGugA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 169720 0.67 1
Target:  5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3'
miRNA:   3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 170257 0.67 1
Target:  5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3'
miRNA:   3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 170780 0.67 1
Target:  5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3'
miRNA:   3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 171317 0.67 1
Target:  5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3'
miRNA:   3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 114988 0.69 1
Target:  5'- -gAUCAGGGAAGCGuucuUCACUg -3'
miRNA:   3'- gaUAGUUCCUUUGUuuu-GGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 97562 0.67 1
Target:  5'- ---cCAGGGAGGCAAAuCUACUc -3'
miRNA:   3'- gauaGUUCCUUUGUUUuGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 93500 0.67 1
Target:  5'- ---gCAuGGAGGCAuAGCCACUg -3'
miRNA:   3'- gauaGUuCCUUUGUuUUGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 76485 0.72 1
Target:  5'- -aGUCAGGGAAGCcgccGCCGCg -3'
miRNA:   3'- gaUAGUUCCUUUGuuu-UGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 62950 0.66 1
Target:  5'- gCUGUCu-GGGGACGAccCCGCUg -3'
miRNA:   3'- -GAUAGuuCCUUUGUUuuGGUGA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 55662 0.67 1
Target:  5'- --uUCGAGGAGAgCAuAGACCACc -3'
miRNA:   3'- gauAGUUCCUUU-GU-UUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 47719 0.66 1
Target:  5'- -cAUC-AGG-AGCAGGGCCACg -3'
miRNA:   3'- gaUAGuUCCuUUGUUUUGGUGa -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 - 4967 0.66 1
Target:  5'- cCUGUCAacgGGGAGACu--GCCAgUg -3'
miRNA:   3'- -GAUAGU---UCCUUUGuuuUGGUgA- -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 166909 0.66 1
Target:  5'- ---aCAAGGAAAgAAGGCCAg- -3'
miRNA:   3'- gauaGUUCCUUUgUUUUGGUga -5'
MIMAT0003713 ebv-miR-BART15 -38.4 NC_007605.1 + 139379 0.67 1
Target:  5'- ----gAGGGAAACAuGACCACc -3'
miRNA:   3'- gauagUUCCUUUGUuUUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.