Results 1 - 20 of 43 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | - | 171317 | 0.67 | 1 |
Target: 5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3' miRNA: 3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | - | 170780 | 0.67 | 1 |
Target: 5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3' miRNA: 3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | - | 170257 | 0.67 | 1 |
Target: 5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3' miRNA: 3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | - | 169720 | 0.67 | 1 |
Target: 5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3' miRNA: 3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | + | 166909 | 0.66 | 1 |
Target: 5'- ---aCAAGGAAAgAAGGCCAg- -3' miRNA: 3'- gauaGUUCCUUUgUUUUGGUga -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | + | 140426 | 0.7 | 1 |
Target: 5'- uCUAUCAgaauaacagGGGAAGCAAGGCCcccuGCUu -3' miRNA: 3'- -GAUAGU---------UCCUUUGUUUUGG----UGA- -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | - | 139610 | 1.02 | 0.296642 |
Target: 5'- uCUAUCAAGGAAACAAAACCACUg -3' miRNA: 3'- -GAUAGUUCCUUUGUUUUGGUGA- -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | + | 139379 | 0.67 | 1 |
Target: 5'- ----gAGGGAAACAuGACCACc -3' miRNA: 3'- gauagUUCCUUUGUuUUGGUGa -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | + | 133952 | 0.72 | 1 |
Target: 5'- cCUGUUuguGGGAGCGGGACUACUg -3' miRNA: 3'- -GAUAGuu-CCUUUGUUUUGGUGA- -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | - | 131697 | 0.67 | 1 |
Target: 5'- gCUGUCuuuGGGGACcuGACCAUUg -3' miRNA: 3'- -GAUAGuu-CCUUUGuuUUGGUGA- -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | - | 129775 | 0.67 | 1 |
Target: 5'- aCUGUCAAGGGcauGCAAucCUACg -3' miRNA: 3'- -GAUAGUUCCUu--UGUUuuGGUGa -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | - | 128795 | 0.66 | 1 |
Target: 5'- aCUGUCAuGGAAAUugcGGGCCugUa -3' miRNA: 3'- -GAUAGUuCCUUUGu--UUUGGugA- -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | - | 125726 | 0.67 | 1 |
Target: 5'- -gGUCccuAGGAAGCGAcgcggGACCACg -3' miRNA: 3'- gaUAGu--UCCUUUGUU-----UUGGUGa -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | + | 125681 | 0.67 | 1 |
Target: 5'- gCUGUCAuGGccAAACAAuGCCACa -3' miRNA: 3'- -GAUAGUuCC--UUUGUUuUGGUGa -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | - | 125559 | 0.66 | 1 |
Target: 5'- -gGUCAGGGuGGGCAGagGACCAUa -3' miRNA: 3'- gaUAGUUCC-UUUGUU--UUGGUGa -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | - | 117664 | 0.81 | 0.992902 |
Target: 5'- -gAUCGAGGAGACGAgGGCCACg -3' miRNA: 3'- gaUAGUUCCUUUGUU-UUGGUGa -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | - | 114988 | 0.69 | 1 |
Target: 5'- -gAUCAGGGAAGCGuucuUCACUg -3' miRNA: 3'- gaUAGUUCCUUUGUuuu-GGUGA- -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | + | 109727 | 0.73 | 0.999997 |
Target: 5'- aCUAaCGAGGAGACAAAGUCACa -3' miRNA: 3'- -GAUaGUUCCUUUGUUUUGGUGa -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | + | 106432 | 0.7 | 1 |
Target: 5'- -aGUCGAGGgcGCGuuGACCACg -3' miRNA: 3'- gaUAGUUCCuuUGUu-UUGGUGa -5' |
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MIMAT0003713 | ebv-miR-BART15 | -38.4 | NC_007605.1 | - | 97562 | 0.67 | 1 |
Target: 5'- ---cCAGGGAGGCAAAuCUACUc -3' miRNA: 3'- gauaGUUCCUUUGUUUuGGUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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