miRNA display CGI


Results 1 - 20 of 25 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 - 73757 0.66 0.999871
Target:  5'- -cGGAGCACaugcGCACCUACUUc-- -3'
miRNA:   3'- guUCUCGUG----UGUGGGUGAGaua -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 - 60133 0.66 0.99983
Target:  5'- gGGGAGCAgACACCCcacCUCc-- -3'
miRNA:   3'- gUUCUCGUgUGUGGGu--GAGaua -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 + 112727 0.66 0.999778
Target:  5'- --cGAGCAUACugCCGCcaCUAUg -3'
miRNA:   3'- guuCUCGUGUGugGGUGa-GAUA- -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 + 132782 0.66 0.999778
Target:  5'- aGAGGGCAC-CGCCCAgUUg-- -3'
miRNA:   3'- gUUCUCGUGuGUGGGUgAGaua -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 + 136923 0.66 0.999778
Target:  5'- -cAGGGCcccuGCuACACCCACUCg-- -3'
miRNA:   3'- guUCUCG----UG-UGUGGGUGAGaua -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 - 66603 0.67 0.99963
Target:  5'- --cGGGCACACaccACCCAC-CUGg -3'
miRNA:   3'- guuCUCGUGUG---UGGGUGaGAUa -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 + 126986 0.67 0.99963
Target:  5'- cCAAGAGaaGCAuCGCCCACUCc-- -3'
miRNA:   3'- -GUUCUCg-UGU-GUGGGUGAGaua -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 + 8865 0.67 0.999528
Target:  5'- gGAGAGUuCACuGCCCGCUCc-- -3'
miRNA:   3'- gUUCUCGuGUG-UGGGUGAGaua -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 - 163476 0.67 0.999403
Target:  5'- --uGAGCuACGCACCCGCcaugCUGg -3'
miRNA:   3'- guuCUCG-UGUGUGGGUGa---GAUa -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 + 101833 0.67 0.999403
Target:  5'- aCGAGAGCGCcucugGCGCCCucgGCUCc-- -3'
miRNA:   3'- -GUUCUCGUG-----UGUGGG---UGAGaua -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 - 55657 0.67 0.999403
Target:  5'- gGAGAGCAUAgACCaC-CUCUAUc -3'
miRNA:   3'- gUUCUCGUGUgUGG-GuGAGAUA- -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 + 137056 0.67 0.999063
Target:  5'- --cGGGCACACaggcccccgaaGCCCACUgUGUg -3'
miRNA:   3'- guuCUCGUGUG-----------UGGGUGAgAUA- -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 - 40114 0.67 0.999042
Target:  5'- -cAGAGCAagcggacCACGCCCAUUCg-- -3'
miRNA:   3'- guUCUCGU-------GUGUGGGUGAGaua -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 - 168207 0.68 0.998839
Target:  5'- aCGAGGGCAgACACCaccuGCUCg-- -3'
miRNA:   3'- -GUUCUCGUgUGUGGg---UGAGaua -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 - 76876 0.68 0.998251
Target:  5'- aCGAG-GCACagGCACCCcCUCUGa -3'
miRNA:   3'- -GUUCuCGUG--UGUGGGuGAGAUa -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 + 7388 0.69 0.994821
Target:  5'- aAGGAuaGCACuCCCACUCUAc -3'
miRNA:   3'- gUUCUcgUGUGuGGGUGAGAUa -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 - 119937 0.7 0.992875
Target:  5'- --uGAGCcugaGCACACCCAC-CUAUg -3'
miRNA:   3'- guuCUCG----UGUGUGGGUGaGAUA- -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 - 150650 0.7 0.992875
Target:  5'- -cAGGGCgGCACGCCCucuCUCUGg -3'
miRNA:   3'- guUCUCG-UGUGUGGGu--GAGAUa -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 - 70951 0.7 0.991704
Target:  5'- aAAGAGCugGCACCCuGCUUc-- -3'
miRNA:   3'- gUUCUCGugUGUGGG-UGAGaua -5'
MIMAT0003714 ebv-miR-BART16 -45.8 NC_007605.1 + 111275 0.7 0.990386
Target:  5'- -cGGAGCuccuC-CACCCGCUCUAg -3'
miRNA:   3'- guUCUCGu---GuGUGGGUGAGAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.