miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1022 3' -54.4 NC_000924.1 + 27674 0.66 0.769754
Target:  5'- cCAGCcACAGCGCaCcAUAGccaACCGCCAg -3'
miRNA:   3'- -GUCGuUGUCGUG-GuUGUCc--UGGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 7897 0.66 0.759431
Target:  5'- gGGCAGC--CAgCAACAGG-CCACCc -3'
miRNA:   3'- gUCGUUGucGUgGUUGUCCuGGUGGu -5'
1022 3' -54.4 NC_000924.1 + 15751 0.66 0.758392
Target:  5'- aCGGUAauuGCAGUaaugaaaGCCAuCAGGGCCGCa- -3'
miRNA:   3'- -GUCGU---UGUCG-------UGGUuGUCCUGGUGgu -5'
1022 3' -54.4 NC_000924.1 + 34665 0.66 0.748976
Target:  5'- aCAGCAGgaAGCGCCAaaaGCGGuuUCGCCGg -3'
miRNA:   3'- -GUCGUUg-UCGUGGU---UGUCcuGGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 33831 0.66 0.748976
Target:  5'- aAGCAACGG-GCCgAACAGGaaGCCGCa- -3'
miRNA:   3'- gUCGUUGUCgUGG-UUGUCC--UGGUGgu -5'
1022 3' -54.4 NC_000924.1 + 46053 0.66 0.747923
Target:  5'- uCAGCAcugagcacagaacGCAGCACCAAaaa-GCCAUCAg -3'
miRNA:   3'- -GUCGU-------------UGUCGUGGUUguccUGGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 27686 0.66 0.72771
Target:  5'- aGGCGAaugcCACCAuuacugacauGCAGGugCGCCAg -3'
miRNA:   3'- gUCGUUguc-GUGGU----------UGUCCugGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 49665 0.67 0.716924
Target:  5'- uCAGguACAagcGCACCAAuCAGGuuuacacccuucGCCACCc -3'
miRNA:   3'- -GUCguUGU---CGUGGUU-GUCC------------UGGUGGu -5'
1022 3' -54.4 NC_000924.1 + 37982 0.67 0.706053
Target:  5'- gAGCAaauauuacccugACGGCGCUGACAGuuUCACCGg -3'
miRNA:   3'- gUCGU------------UGUCGUGGUUGUCcuGGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 39567 0.67 0.706053
Target:  5'- aCAGguGCGGCagGCCcgGugGGGGCgACCGg -3'
miRNA:   3'- -GUCguUGUCG--UGG--UugUCCUGgUGGU- -5'
1022 3' -54.4 NC_000924.1 + 50348 0.67 0.706053
Target:  5'- cCGGCAACcGCACCGAauGGAgCCcCCAu -3'
miRNA:   3'- -GUCGUUGuCGUGGUUguCCU-GGuGGU- -5'
1022 3' -54.4 NC_000924.1 + 251 0.67 0.695107
Target:  5'- gGGCAcucCAGCGCCAGCAuGGuCUACa- -3'
miRNA:   3'- gUCGUu--GUCGUGGUUGU-CCuGGUGgu -5'
1022 3' -54.4 NC_000924.1 + 39527 0.67 0.684098
Target:  5'- -uGCGGCAgGC-CCGGCAGGcCCACa- -3'
miRNA:   3'- guCGUUGU-CGuGGUUGUCCuGGUGgu -5'
1022 3' -54.4 NC_000924.1 + 46990 0.68 0.639667
Target:  5'- uGGCAuUAGCGCCGGugcCAGGuguuuuagcACCGCCAc -3'
miRNA:   3'- gUCGUuGUCGUGGUU---GUCC---------UGGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 56681 0.68 0.628515
Target:  5'- aCGGCAGCacgGGaCGCCGuCAGGucacccGCCGCCAc -3'
miRNA:   3'- -GUCGUUG---UC-GUGGUuGUCC------UGGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 29365 0.68 0.625169
Target:  5'- uGGCugaGACAGCACCAAaacuucgugcugacCGGGaaagaaucaacGCCGCCAg -3'
miRNA:   3'- gUCG---UUGUCGUGGUU--------------GUCC-----------UGGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 29943 0.68 0.617366
Target:  5'- -cGUAGCGGUGCCAGCGGuGGCUAUa- -3'
miRNA:   3'- guCGUUGUCGUGGUUGUC-CUGGUGgu -5'
1022 3' -54.4 NC_000924.1 + 33174 0.69 0.551076
Target:  5'- gGGCAcauGCAGCugCAcaACGGGAUaauGCCAg -3'
miRNA:   3'- gUCGU---UGUCGugGU--UGUCCUGg--UGGU- -5'
1022 3' -54.4 NC_000924.1 + 34704 0.7 0.529417
Target:  5'- aAGCAcgaaGCAG-ACCAgcGCGGGugCGCCGg -3'
miRNA:   3'- gUCGU----UGUCgUGGU--UGUCCugGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 14132 0.71 0.435632
Target:  5'- gAGCGGCAGCAaguggggaaCAGCAGaagaccuGACCGCCGc -3'
miRNA:   3'- gUCGUUGUCGUg--------GUUGUC-------CUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.