miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10248 5' -65.5 NC_002686.1 + 123500 0.66 0.508709
Target:  5'- gCGGCCCuucacuggagcgACGGGCgCCGcGGUCUCgGc -3'
miRNA:   3'- -GCUGGG------------UGCCCGgGGCuCCAGGGgCc -5'
10248 5' -65.5 NC_002686.1 + 104655 0.66 0.508709
Target:  5'- gCGGCCCuucacuggagcgACGGGCgCCGcGGUCUCgGc -3'
miRNA:   3'- -GCUGGG------------UGCCCGgGGCuCCAGGGgCc -5'
10248 5' -65.5 NC_002686.1 + 104021 0.66 0.49968
Target:  5'- cCGGCCCucuccCGGGUCCCGAaaaaaCCGGg -3'
miRNA:   3'- -GCUGGGu----GCCCGGGGCUccaggGGCC- -5'
10248 5' -65.5 NC_002686.1 + 124134 0.66 0.49968
Target:  5'- cCGGCCCucuccCGGGUCCCGAaaaaaCCGGg -3'
miRNA:   3'- -GCUGGGu----GCCCGGGGCUccaggGGCC- -5'
10248 5' -65.5 NC_002686.1 + 103989 0.66 0.48184
Target:  5'- --uCCCGuuGcCCCCGggGGGUCCCCGGc -3'
miRNA:   3'- gcuGGGUgcCcGGGGC--UCCAGGGGCC- -5'
10248 5' -65.5 NC_002686.1 + 92375 0.67 0.430301
Target:  5'- aCGGCUUugGGaugGCCCUGGGGaUCCCGu -3'
miRNA:   3'- -GCUGGGugCC---CGGGGCUCCaGGGGCc -5'
10248 5' -65.5 NC_002686.1 + 105094 0.67 0.430301
Target:  5'- gGACCCGCGcugccGGgCCUGcGGcCCUCGGg -3'
miRNA:   3'- gCUGGGUGC-----CCgGGGCuCCaGGGGCC- -5'
10248 5' -65.5 NC_002686.1 + 123061 0.67 0.430301
Target:  5'- gGACCCGCGcugccGGgCCUGcGGcCCUCGGg -3'
miRNA:   3'- gCUGGGUGC-----CCgGGGCuCCaGGGGCC- -5'
10248 5' -65.5 NC_002686.1 + 107856 0.67 0.422028
Target:  5'- gGACCU-CGGGgCCCGuGGGUCgCuuGGu -3'
miRNA:   3'- gCUGGGuGCCCgGGGC-UCCAG-GggCC- -5'
10248 5' -65.5 NC_002686.1 + 120298 0.67 0.422028
Target:  5'- gGACCU-CGGGgCCCGuGGGUCgCuuGGu -3'
miRNA:   3'- gCUGGGuGCCCgGGGC-UCCAG-GggCC- -5'
10248 5' -65.5 NC_002686.1 + 121561 0.67 0.413851
Target:  5'- gGGCagagugCACGGGCCgCGGuagcGG-CCCCGGa -3'
miRNA:   3'- gCUGg-----GUGCCCGGgGCU----CCaGGGGCC- -5'
10248 5' -65.5 NC_002686.1 + 104470 0.67 0.413851
Target:  5'- -cACCCAcCGGGCgccCCCGGGGggCUCCGc -3'
miRNA:   3'- gcUGGGU-GCCCG---GGGCUCCa-GGGGCc -5'
10248 5' -65.5 NC_002686.1 + 106594 0.67 0.413851
Target:  5'- gGGCagagugCACGGGCCgCGGuagcGG-CCCCGGa -3'
miRNA:   3'- gCUGg-----GUGCCCGGgGCU----CCaGGGGCC- -5'
10248 5' -65.5 NC_002686.1 + 123685 0.67 0.413851
Target:  5'- -cACCCAcCGGGCgccCCCGGGGggCUCCGc -3'
miRNA:   3'- gcUGGGU-GCCCG---GGGCUCCa-GGGGCc -5'
10248 5' -65.5 NC_002686.1 + 120213 0.68 0.366907
Target:  5'- cCGAUCCACGcacaCCaAGGUCCCCGGc -3'
miRNA:   3'- -GCUGGGUGCccggGGcUCCAGGGGCC- -5'
10248 5' -65.5 NC_002686.1 + 107942 0.68 0.366907
Target:  5'- cCGAUCCACGcacaCCaAGGUCCCCGGc -3'
miRNA:   3'- -GCUGGGUGCccggGGcUCCAGGGGCC- -5'
10248 5' -65.5 NC_002686.1 + 105446 0.68 0.359448
Target:  5'- gGGCCUcgaacGCGGGUUCCGcuGUCCCCa- -3'
miRNA:   3'- gCUGGG-----UGCCCGGGGCucCAGGGGcc -5'
10248 5' -65.5 NC_002686.1 + 122709 0.68 0.359448
Target:  5'- gGGCCUcgaacGCGGGUUCCGcuGUCCCCa- -3'
miRNA:   3'- gCUGGG-----UGCCCGGGGCucCAGGGGcc -5'
10248 5' -65.5 NC_002686.1 + 123176 0.69 0.355023
Target:  5'- gGGCaCCACGGcCCCCGcgaggaugacggugaAGGcgcagCCCCGGg -3'
miRNA:   3'- gCUG-GGUGCCcGGGGC---------------UCCa----GGGGCC- -5'
10248 5' -65.5 NC_002686.1 + 104979 0.69 0.355023
Target:  5'- gGGCaCCACGGcCCCCGcgaggaugacggugaAGGcgcagCCCCGGg -3'
miRNA:   3'- gCUG-GGUGCCcGGGGC---------------UCCa----GGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.