miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10283 3' -58.9 NC_002687.1 + 101159 0.66 0.935939
Target:  5'- aGUGGUgUGACCGAaauguCGCCGAU--UGCCAg -3'
miRNA:   3'- -CACCG-GCUGGCU-----GUGGCUAgcACGGU- -5'
10283 3' -58.9 NC_002687.1 + 199798 0.66 0.92493
Target:  5'- gGUGGUggCGAUUGGCACCGAgCGUaauuuauuacgacgGCCAc -3'
miRNA:   3'- -CACCG--GCUGGCUGUGGCUaGCA--------------CGGU- -5'
10283 3' -58.9 NC_002687.1 + 268315 0.66 0.919803
Target:  5'- -cGGCCGACCucaaaggcaaccugGAUACCGA--GUGCUu -3'
miRNA:   3'- caCCGGCUGG--------------CUGUGGCUagCACGGu -5'
10283 3' -58.9 NC_002687.1 + 224389 0.67 0.916092
Target:  5'- --uGCCGauGCCGAUGCCGAUgcCGaUGCCGa -3'
miRNA:   3'- cacCGGC--UGGCUGUGGCUA--GC-ACGGU- -5'
10283 3' -58.9 NC_002687.1 + 29929 0.67 0.910616
Target:  5'- -aGGCaGGCauCGGCuuuCCGAUCGUGCUg -3'
miRNA:   3'- caCCGgCUG--GCUGu--GGCUAGCACGGu -5'
10283 3' -58.9 NC_002687.1 + 211025 0.67 0.904936
Target:  5'- cGUGGCCGGCCu-CugCGAccaGUGCa- -3'
miRNA:   3'- -CACCGGCUGGcuGugGCUag-CACGgu -5'
10283 3' -58.9 NC_002687.1 + 209796 0.67 0.904357
Target:  5'- -gGGCCGAUCGGCGucuUUGAUCGagauuuggagagcUGCCGc -3'
miRNA:   3'- caCCGGCUGGCUGU---GGCUAGC-------------ACGGU- -5'
10283 3' -58.9 NC_002687.1 + 98160 0.67 0.899054
Target:  5'- -cGGU--GCCGAUgguGCCGGUgGUGCCAg -3'
miRNA:   3'- caCCGgcUGGCUG---UGGCUAgCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 151560 0.67 0.899054
Target:  5'- -aGGCUGcuucucuauUCGACACUcGUCGUGCCGa -3'
miRNA:   3'- caCCGGCu--------GGCUGUGGcUAGCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 97800 0.67 0.892972
Target:  5'- cUGGCCcACCGGCACC-AUCG-GCa- -3'
miRNA:   3'- cACCGGcUGGCUGUGGcUAGCaCGgu -5'
10283 3' -58.9 NC_002687.1 + 84518 0.67 0.889227
Target:  5'- gGUGGCuucaCGcucgguacagacgucACCGGCAUCG-UCGUGCCGu -3'
miRNA:   3'- -CACCG----GC---------------UGGCUGUGGCuAGCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 215666 0.68 0.880219
Target:  5'- cGUGGCCGucacugucGCCGuCGCCGAgccuaucgcCGUcGCCGa -3'
miRNA:   3'- -CACCGGC--------UGGCuGUGGCUa--------GCA-CGGU- -5'
10283 3' -58.9 NC_002687.1 + 172800 0.68 0.880219
Target:  5'- --aGCacaacaGGCCGGCACCGAUUGUGaCAa -3'
miRNA:   3'- cacCGg-----CUGGCUGUGGCUAGCACgGU- -5'
10283 3' -58.9 NC_002687.1 + 238689 0.68 0.876243
Target:  5'- -gGGCC-ACCGACGCUGcgCGUgaaacucuuguggauGCCAu -3'
miRNA:   3'- caCCGGcUGGCUGUGGCuaGCA---------------CGGU- -5'
10283 3' -58.9 NC_002687.1 + 297990 0.68 0.873555
Target:  5'- -cGGCCGccaccgcuuCCGACuggcgaggcgGCCGcuuUCGUGCCAa -3'
miRNA:   3'- caCCGGCu--------GGCUG----------UGGCu--AGCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 145747 0.68 0.873555
Target:  5'- cUGGCCG-CCGACAagaucCCGAUCaacacgGCCu -3'
miRNA:   3'- cACCGGCuGGCUGU-----GGCUAGca----CGGu -5'
10283 3' -58.9 NC_002687.1 + 87761 0.68 0.873555
Target:  5'- -cGGCCuGAUCGGCGCCGAacagcUCgGUGgCAg -3'
miRNA:   3'- caCCGG-CUGGCUGUGGCU-----AG-CACgGU- -5'
10283 3' -58.9 NC_002687.1 + 298057 0.68 0.866705
Target:  5'- -aGGCCGcgGCCGcCGCCGcgcgCGUGCUu -3'
miRNA:   3'- caCCGGC--UGGCuGUGGCua--GCACGGu -5'
10283 3' -58.9 NC_002687.1 + 269893 0.68 0.866705
Target:  5'- -gGGUCGAacagccacgccUUGGCACUGGUgGUGCCAa -3'
miRNA:   3'- caCCGGCU-----------GGCUGUGGCUAgCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 328257 0.69 0.829821
Target:  5'- uUGGUgGACaaCGuCGgCGAUCGUGCCAc -3'
miRNA:   3'- cACCGgCUG--GCuGUgGCUAGCACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.