miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10286 3' -53.5 NC_002687.1 + 200802 0.66 0.996501
Target:  5'- uGCGUCugcacCGAgGcGCACGaggGCGCGCa -3'
miRNA:   3'- gUGCAGua---GCUgCuCGUGUa--CGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 67876 0.66 0.996501
Target:  5'- gGgGUCgaacuugcuGUUGACGuGCACAacGCGCGCa -3'
miRNA:   3'- gUgCAG---------UAGCUGCuCGUGUa-CGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 143030 0.66 0.996501
Target:  5'- gCACGUCGaUGAagcccuCGGGgGCAUGCGCc- -3'
miRNA:   3'- -GUGCAGUaGCU------GCUCgUGUACGCGug -5'
10286 3' -53.5 NC_002687.1 + 41911 0.66 0.995933
Target:  5'- gACGUCAUUGGCccuuccaugGAugGCGUGCGCAa -3'
miRNA:   3'- gUGCAGUAGCUG---------CUcgUGUACGCGUg -5'
10286 3' -53.5 NC_002687.1 + 85351 0.66 0.995291
Target:  5'- -cUGUUggCGAUGAGCGCGcacgGCGCGa -3'
miRNA:   3'- guGCAGuaGCUGCUCGUGUa---CGCGUg -5'
10286 3' -53.5 NC_002687.1 + 330950 0.66 0.995291
Target:  5'- cCACGUaCGUgaaucgccaCGACGGcuGCcgGCAUGUGCACg -3'
miRNA:   3'- -GUGCA-GUA---------GCUGCU--CG--UGUACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 283544 0.66 0.995223
Target:  5'- uCACGagggggcUCG-CGACacuauGCACAUGUGCACg -3'
miRNA:   3'- -GUGC-------AGUaGCUGcu---CGUGUACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 145484 0.66 0.99457
Target:  5'- gCGCGcC-UCGGCGAGCAgAUcggcaaguucGCGUACu -3'
miRNA:   3'- -GUGCaGuAGCUGCUCGUgUA----------CGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 110415 0.66 0.99457
Target:  5'- -cCGUCGUCGAC-AGCACAcacgacaucUaCGCACu -3'
miRNA:   3'- guGCAGUAGCUGcUCGUGU---------AcGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 233889 0.66 0.993762
Target:  5'- aGCaGUUGgaaaaGGCG-GCACAUGCGUACg -3'
miRNA:   3'- gUG-CAGUag---CUGCuCGUGUACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 200536 0.66 0.993762
Target:  5'- gCAUGUCAaCGACGcgguGCACAgucgccucCGCACa -3'
miRNA:   3'- -GUGCAGUaGCUGCu---CGUGUac------GCGUG- -5'
10286 3' -53.5 NC_002687.1 + 76333 0.66 0.993762
Target:  5'- gCACGUCgguguccagcauGUCGACGucaaAGUACAUGCagaaCACg -3'
miRNA:   3'- -GUGCAG------------UAGCUGC----UCGUGUACGc---GUG- -5'
10286 3' -53.5 NC_002687.1 + 129786 0.66 0.993762
Target:  5'- uGCGUCGUUccCGGGCGUgAUGUGCACa -3'
miRNA:   3'- gUGCAGUAGcuGCUCGUG-UACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 65870 0.67 0.990744
Target:  5'- cCACGUCAagGACGAGCugGUagGUAa -3'
miRNA:   3'- -GUGCAGUagCUGCUCGugUAcgCGUg -5'
10286 3' -53.5 NC_002687.1 + 17370 0.67 0.989516
Target:  5'- gGCaGUCcggCGGCGuuuuGCGCA-GCGCACa -3'
miRNA:   3'- gUG-CAGua-GCUGCu---CGUGUaCGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 23744 0.67 0.989516
Target:  5'- -cUGU-GUCGAgGAGCugAuggUGCGCACa -3'
miRNA:   3'- guGCAgUAGCUgCUCGugU---ACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 80789 0.67 0.989516
Target:  5'- aACGUCGguUCG-CGGGCGCAgGUaauGCACg -3'
miRNA:   3'- gUGCAGU--AGCuGCUCGUGUaCG---CGUG- -5'
10286 3' -53.5 NC_002687.1 + 123426 0.67 0.989124
Target:  5'- gACGUCgacGUCcAUGAGCAUgugaauggccucggAUGCGCACc -3'
miRNA:   3'- gUGCAG---UAGcUGCUCGUG--------------UACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 198660 0.67 0.988164
Target:  5'- gGCGuUCAcgagccUCGAaguggGAGCGCucAUGCGCACa -3'
miRNA:   3'- gUGC-AGU------AGCUg----CUCGUG--UACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 107674 0.68 0.986682
Target:  5'- aACGUUuUCGGCGAgGUACAcGUGCAa -3'
miRNA:   3'- gUGCAGuAGCUGCU-CGUGUaCGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.