Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10286 | 3' | -53.5 | NC_002687.1 | + | 276144 | 0.72 | 0.895742 |
Target: 5'- uCGCGccggCGUCGAUGAGC-C-UGCGCAUg -3' miRNA: 3'- -GUGCa---GUAGCUGCUCGuGuACGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 155497 | 0.69 | 0.972006 |
Target: 5'- cCGCGUCGUCGGCGuacGC-CAUuaGUACc -3' miRNA: 3'- -GUGCAGUAGCUGCu--CGuGUAcgCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 332210 | 0.69 | 0.969212 |
Target: 5'- -cCGUCGUUGGaggcaUGAGCaACGUGCGCGg -3' miRNA: 3'- guGCAGUAGCU-----GCUCG-UGUACGCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 199616 | 0.69 | 0.969212 |
Target: 5'- -gUGUCAaccUCGACGGGCGCAcuuugaucgagcUGUGCGa -3' miRNA: 3'- guGCAGU---AGCUGCUCGUGU------------ACGCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 68954 | 0.69 | 0.966224 |
Target: 5'- -cUGUCGUUGGCGaAGUAgGaGCGCACg -3' miRNA: 3'- guGCAGUAGCUGC-UCGUgUaCGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 74051 | 0.7 | 0.948216 |
Target: 5'- uGCGcCGUCGaccuaugucucuGCGAGCGCuugGCGUACu -3' miRNA: 3'- gUGCaGUAGC------------UGCUCGUGua-CGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 256972 | 0.7 | 0.948216 |
Target: 5'- -uUGUCGUUGACGAuGCGC--GUGCACg -3' miRNA: 3'- guGCAGUAGCUGCU-CGUGuaCGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 270678 | 0.7 | 0.943972 |
Target: 5'- gGCGUC--UGugGAGCGC--GCGCGCg -3' miRNA: 3'- gUGCAGuaGCugCUCGUGuaCGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 293357 | 0.72 | 0.90199 |
Target: 5'- -gUGUCAUCGGCaGAGCGC--GCGCAg -3' miRNA: 3'- guGCAGUAGCUG-CUCGUGuaCGCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 77444 | 0.69 | 0.974612 |
Target: 5'- gACGUcCGUCGACggGAGCGuCGUGCcaGCAUg -3' miRNA: 3'- gUGCA-GUAGCUG--CUCGU-GUACG--CGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 238528 | 0.68 | 0.977037 |
Target: 5'- aACGUCAUCGuCGu---CAUGUGCGCc -3' miRNA: 3'- gUGCAGUAGCuGCucguGUACGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 323374 | 0.68 | 0.986682 |
Target: 5'- -gUGUCAUCGcaAUGAGCACggGuCGCAg -3' miRNA: 3'- guGCAGUAGC--UGCUCGUGuaC-GCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 41911 | 0.66 | 0.995933 |
Target: 5'- gACGUCAUUGGCccuuccaugGAugGCGUGCGCAa -3' miRNA: 3'- gUGCAGUAGCUG---------CUcgUGUACGCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 330950 | 0.66 | 0.995291 |
Target: 5'- cCACGUaCGUgaaucgccaCGACGGcuGCcgGCAUGUGCACg -3' miRNA: 3'- -GUGCA-GUA---------GCUGCU--CG--UGUACGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 85351 | 0.66 | 0.995291 |
Target: 5'- -cUGUUggCGAUGAGCGCGcacgGCGCGa -3' miRNA: 3'- guGCAGuaGCUGCUCGUGUa---CGCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 76333 | 0.66 | 0.993762 |
Target: 5'- gCACGUCgguguccagcauGUCGACGucaaAGUACAUGCagaaCACg -3' miRNA: 3'- -GUGCAG------------UAGCUGC----UCGUGUACGc---GUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 200536 | 0.66 | 0.993762 |
Target: 5'- gCAUGUCAaCGACGcgguGCACAgucgccucCGCACa -3' miRNA: 3'- -GUGCAGUaGCUGCu---CGUGUac------GCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 129786 | 0.66 | 0.993762 |
Target: 5'- uGCGUCGUUccCGGGCGUgAUGUGCACa -3' miRNA: 3'- gUGCAGUAGcuGCUCGUG-UACGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 23744 | 0.67 | 0.989516 |
Target: 5'- -cUGU-GUCGAgGAGCugAuggUGCGCACa -3' miRNA: 3'- guGCAgUAGCUgCUCGugU---ACGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 123426 | 0.67 | 0.989124 |
Target: 5'- gACGUCgacGUCcAUGAGCAUgugaauggccucggAUGCGCACc -3' miRNA: 3'- gUGCAG---UAGcUGCUCGUG--------------UACGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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