miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10289 3' -54.9 NC_002687.1 + 277085 0.66 0.989442
Target:  5'- aCACGCagCCGCCACAgcCCCAGcuUCGuGAc- -3'
miRNA:   3'- -GUGCG--GGUGGUGUa-GGGUU--AGC-CUau -5'
10289 3' -54.9 NC_002687.1 + 297389 0.66 0.989442
Target:  5'- cCAUGCUCAUCGCGaCCCGAUU-GAUAa -3'
miRNA:   3'- -GUGCGGGUGGUGUaGGGUUAGcCUAU- -5'
10289 3' -54.9 NC_002687.1 + 231276 0.66 0.989442
Target:  5'- cCACuCCCACCACuUCCCc--CGGGc- -3'
miRNA:   3'- -GUGcGGGUGGUGuAGGGuuaGCCUau -5'
10289 3' -54.9 NC_002687.1 + 146021 0.66 0.989442
Target:  5'- uGCG-CCGCCGCuUCUCcGUCGGAc- -3'
miRNA:   3'- gUGCgGGUGGUGuAGGGuUAGCCUau -5'
10289 3' -54.9 NC_002687.1 + 150385 0.66 0.989442
Target:  5'- gGgGUgUACguCAUCCCAAUCGGGa- -3'
miRNA:   3'- gUgCGgGUGguGUAGGGUUAGCCUau -5'
10289 3' -54.9 NC_002687.1 + 211629 0.66 0.986605
Target:  5'- -uCGCCCucguacACCGCAagCCCAAucUCGGAc- -3'
miRNA:   3'- guGCGGG------UGGUGUa-GGGUU--AGCCUau -5'
10289 3' -54.9 NC_002687.1 + 62200 0.66 0.984984
Target:  5'- gAUGaCUCugUGCuuuUCCCGGUCGGAUGc -3'
miRNA:   3'- gUGC-GGGugGUGu--AGGGUUAGCCUAU- -5'
10289 3' -54.9 NC_002687.1 + 201327 0.66 0.984984
Target:  5'- aCACGCCCGCCugccCcgCCCGAgcgCGcAUGa -3'
miRNA:   3'- -GUGCGGGUGGu---GuaGGGUUa--GCcUAU- -5'
10289 3' -54.9 NC_002687.1 + 94642 0.66 0.984814
Target:  5'- uCACGUCUguGCCGCGcaacucUCCCGaugugucacaaaaGUCGGAUGu -3'
miRNA:   3'- -GUGCGGG--UGGUGU------AGGGU-------------UAGCCUAU- -5'
10289 3' -54.9 NC_002687.1 + 217939 0.66 0.983217
Target:  5'- -cCGCCCGCCACcccGUUgCGGUaCGGAUc -3'
miRNA:   3'- guGCGGGUGGUG---UAGgGUUA-GCCUAu -5'
10289 3' -54.9 NC_002687.1 + 199768 0.66 0.983217
Target:  5'- -gUGCCCGCucguUugGUCCCGAggGGAUAc -3'
miRNA:   3'- guGCGGGUG----GugUAGGGUUagCCUAU- -5'
10289 3' -54.9 NC_002687.1 + 182961 0.66 0.983217
Target:  5'- cCACGCCCACCAagcuUUUCGAaaGGAUc -3'
miRNA:   3'- -GUGCGGGUGGUgu--AGGGUUagCCUAu -5'
10289 3' -54.9 NC_002687.1 + 247921 0.66 0.983032
Target:  5'- gACGCCgGCUguguuuuGCAUCCCcggagCGGGUGg -3'
miRNA:   3'- gUGCGGgUGG-------UGUAGGGuua--GCCUAU- -5'
10289 3' -54.9 NC_002687.1 + 200343 0.66 0.982658
Target:  5'- uGCGCUCACCACGagcugaccacUCgCCuggccacucgcuuuGGUCGGAUAa -3'
miRNA:   3'- gUGCGGGUGGUGU----------AG-GG--------------UUAGCCUAU- -5'
10289 3' -54.9 NC_002687.1 + 224466 0.67 0.981298
Target:  5'- aGCGCcaccgCCACCGCGUCCCGAaCGu--- -3'
miRNA:   3'- gUGCG-----GGUGGUGUAGGGUUaGCcuau -5'
10289 3' -54.9 NC_002687.1 + 302942 0.67 0.981298
Target:  5'- cCACGCaCCGcCCACGUgcaaCCCc-UCGGGUAa -3'
miRNA:   3'- -GUGCG-GGU-GGUGUA----GGGuuAGCCUAU- -5'
10289 3' -54.9 NC_002687.1 + 160667 0.67 0.981298
Target:  5'- gCACGUCCACCACGacUCCUuccGUCuGAa- -3'
miRNA:   3'- -GUGCGGGUGGUGU--AGGGu--UAGcCUau -5'
10289 3' -54.9 NC_002687.1 + 13807 0.67 0.976973
Target:  5'- aCACGCCCugCGCAcgucuUCCCGuugCGuGGc- -3'
miRNA:   3'- -GUGCGGGugGUGU-----AGGGUua-GC-CUau -5'
10289 3' -54.9 NC_002687.1 + 114420 0.67 0.976973
Target:  5'- gGCuGCCCACCGCuacCCCaAGUCGcGAa- -3'
miRNA:   3'- gUG-CGGGUGGUGua-GGG-UUAGC-CUau -5'
10289 3' -54.9 NC_002687.1 + 308784 0.67 0.974554
Target:  5'- gCGCGCCCGCC-CcgCCgGGgucgcCGGGUGg -3'
miRNA:   3'- -GUGCGGGUGGuGuaGGgUUa----GCCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.