miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10290 3' -58.1 NC_002687.1 + 224827 0.78 0.340877
Target:  5'- --aAGCUggccacgaGCUGCCGCUgCCGCUGCCGc -3'
miRNA:   3'- gugUCGA--------CGAUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 223903 0.76 0.42703
Target:  5'- aACuGCUGCUGuuGCUgUCGCUGCCa -3'
miRNA:   3'- gUGuCGACGAUggCGAaGGCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 208749 0.7 0.766034
Target:  5'- uCACuGCUGCUuccaucgucgucgcuGCUGCUUCCaucgucGCUGCUGc -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAAGG------CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 208602 0.7 0.766034
Target:  5'- uCACuGCUGCUuccaucgucgucgcuGCUGCUUCCaucgucGCUGCUGc -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAAGG------CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 10769 0.7 0.780213
Target:  5'- aCACAcccCUGCUGCaaccacgguCGCgUCCGCUGCCu -3'
miRNA:   3'- -GUGUc--GACGAUG---------GCGaAGGCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 10650 0.7 0.797506
Target:  5'- cUACcuCUGCUACCGCUUCUuCUGCa- -3'
miRNA:   3'- -GUGucGACGAUGGCGAAGGcGACGgc -5'
10290 3' -58.1 NC_002687.1 + 284268 0.69 0.833584
Target:  5'- cCGCcGCUGCUggcucacaagccccaGCCGCUgCUGCUGCg- -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAaGGCGACGgc -5'
10290 3' -58.1 NC_002687.1 + 160310 0.69 0.83827
Target:  5'- gGCGGCgGCUGCCuuggccgccccgGCUUCCuuUGCCu -3'
miRNA:   3'- gUGUCGaCGAUGG------------CGAAGGcgACGGc -5'
10290 3' -58.1 NC_002687.1 + 174000 0.69 0.845945
Target:  5'- cCACGuacGUUACCGCUUCCGCguccGCCu -3'
miRNA:   3'- -GUGUcgaCGAUGGCGAAGGCGa---CGGc -5'
10290 3' -58.1 NC_002687.1 + 39612 0.68 0.867904
Target:  5'- aCGCAGgUG--ACCGcCUUCgGCUGCCa -3'
miRNA:   3'- -GUGUCgACgaUGGC-GAAGgCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 24034 0.7 0.753402
Target:  5'- uGCAGgUGCcGCUaCUUCUGCUGCUGg -3'
miRNA:   3'- gUGUCgACGaUGGcGAAGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 102945 0.7 0.753402
Target:  5'- uGCuGCUGCUGuuGCUguugCUGUUGCUGc -3'
miRNA:   3'- gUGuCGACGAUggCGAa---GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 293901 0.76 0.470228
Target:  5'- gGgGGCUGCUGCUGUcgCUGCUGCUGu -3'
miRNA:   3'- gUgUCGACGAUGGCGaaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 138337 0.74 0.562523
Target:  5'- gCGCGGCUGCUGCUGUggagaggCCGC-GUCGg -3'
miRNA:   3'- -GUGUCGACGAUGGCGaa-----GGCGaCGGC- -5'
10290 3' -58.1 NC_002687.1 + 10404 0.74 0.562523
Target:  5'- cUACuGCUGCUGCUGCUgccaccacuUCCGC-GCCa -3'
miRNA:   3'- -GUGuCGACGAUGGCGA---------AGGCGaCGGc -5'
10290 3' -58.1 NC_002687.1 + 11686 0.74 0.581654
Target:  5'- uGCuccuGCUGCcGCCGCUaCUGCUGCUGc -3'
miRNA:   3'- gUGu---CGACGaUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 304249 0.67 0.90659
Target:  5'- uCGCAGCUcagagcGCUACUGCUgCUGCaGCUa -3'
miRNA:   3'- -GUGUCGA------CGAUGGCGAaGGCGaCGGc -5'
10290 3' -58.1 NC_002687.1 + 283306 0.67 0.900653
Target:  5'- ---uGCUGUUGCUGUUcCUGCUGCUGc -3'
miRNA:   3'- guguCGACGAUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 298246 0.68 0.877575
Target:  5'- uCACGGCcuuuuuuauuccuguUGCUACUGUUcgCCGCaGCCa -3'
miRNA:   3'- -GUGUCG---------------ACGAUGGCGAa-GGCGaCGGc -5'
10290 3' -58.1 NC_002687.1 + 208928 0.71 0.735035
Target:  5'- uCGCuGCUGCUuccaucgucgcuGCUGCUUCCaucaucucuGCUGCCu -3'
miRNA:   3'- -GUGuCGACGA------------UGGCGAAGG---------CGACGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.