miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10290 3' -58.1 NC_002687.1 + 291365 0.75 0.488122
Target:  5'- nGCuGCUGCUACUGUUgCUGCUGCUGc -3'
miRNA:   3'- gUGuCGACGAUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 69451 0.68 0.881603
Target:  5'- gACAGCgcgUGCU-CCGCUUUCGCaGgCGg -3'
miRNA:   3'- gUGUCG---ACGAuGGCGAAGGCGaCgGC- -5'
10290 3' -58.1 NC_002687.1 + 275109 0.71 0.741503
Target:  5'- uCACGGC-GCUACaCGUUUCCGCuaaaaacggucacgUGCUGg -3'
miRNA:   3'- -GUGUCGaCGAUG-GCGAAGGCG--------------ACGGC- -5'
10290 3' -58.1 NC_002687.1 + 297988 0.75 0.515544
Target:  5'- uGCGGCcGCcACCGCUUCCGaCUGgCGa -3'
miRNA:   3'- gUGUCGaCGaUGGCGAAGGC-GACgGC- -5'
10290 3' -58.1 NC_002687.1 + 279370 0.66 0.933092
Target:  5'- uGCAGCUGacgcuggagUGCCGUccggUUCCaCUGCCGc -3'
miRNA:   3'- gUGUCGACg--------AUGGCG----AAGGcGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 283306 0.67 0.900653
Target:  5'- ---uGCUGUUGCUGUUcCUGCUGCUGc -3'
miRNA:   3'- guguCGACGAUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 210387 0.66 0.937751
Target:  5'- uGCAGCUGCaccACUGCca-CGaCUGCCa -3'
miRNA:   3'- gUGUCGACGa--UGGCGaagGC-GACGGc -5'
10290 3' -58.1 NC_002687.1 + 208928 0.71 0.735035
Target:  5'- uCGCuGCUGCUuccaucgucgcuGCUGCUUCCaucaucucuGCUGCCu -3'
miRNA:   3'- -GUGuCGACGA------------UGGCGAAGG---------CGACGGc -5'
10290 3' -58.1 NC_002687.1 + 102945 0.7 0.753402
Target:  5'- uGCuGCUGCUGuuGCUguugCUGUUGCUGc -3'
miRNA:   3'- gUGuCGACGAUggCGAa---GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 24034 0.7 0.753402
Target:  5'- uGCAGgUGCcGCUaCUUCUGCUGCUGg -3'
miRNA:   3'- gUGUCgACGaUGGcGAAGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 304249 0.67 0.90659
Target:  5'- uCGCAGCUcagagcGCUACUGCUgCUGCaGCUa -3'
miRNA:   3'- -GUGUCGA------CGAUGGCGAaGGCGaCGGc -5'
10290 3' -58.1 NC_002687.1 + 10686 0.67 0.90659
Target:  5'- cCACAaCUGCcGCCGCcacugCCGCcGCCa -3'
miRNA:   3'- -GUGUcGACGaUGGCGaa---GGCGaCGGc -5'
10290 3' -58.1 NC_002687.1 + 296066 0.67 0.912317
Target:  5'- gCACGGCaucaGCc-CCGCUgcUCCGCUGCa- -3'
miRNA:   3'- -GUGUCGa---CGauGGCGA--AGGCGACGgc -5'
10290 3' -58.1 NC_002687.1 + 319287 0.66 0.933092
Target:  5'- aCAUAGCUGCgUGCC-CUUCCGa--CCGc -3'
miRNA:   3'- -GUGUCGACG-AUGGcGAAGGCgacGGC- -5'
10290 3' -58.1 NC_002687.1 + 160310 0.69 0.83827
Target:  5'- gGCGGCgGCUGCCuuggccgccccgGCUUCCuuUGCCu -3'
miRNA:   3'- gUGUCGaCGAUGG------------CGAAGGcgACGGc -5'
10290 3' -58.1 NC_002687.1 + 284268 0.69 0.833584
Target:  5'- cCGCcGCUGCUggcucacaagccccaGCCGCUgCUGCUGCg- -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAaGGCGACGgc -5'
10290 3' -58.1 NC_002687.1 + 10650 0.7 0.797506
Target:  5'- cUACcuCUGCUACCGCUUCUuCUGCa- -3'
miRNA:   3'- -GUGucGACGAUGGCGAAGGcGACGgc -5'
10290 3' -58.1 NC_002687.1 + 10769 0.7 0.780213
Target:  5'- aCACAcccCUGCUGCaaccacgguCGCgUCCGCUGCCu -3'
miRNA:   3'- -GUGUc--GACGAUG---------GCGaAGGCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 208602 0.7 0.766034
Target:  5'- uCACuGCUGCUuccaucgucgucgcuGCUGCUUCCaucgucGCUGCUGc -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAAGG------CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 208749 0.7 0.766034
Target:  5'- uCACuGCUGCUuccaucgucgucgcuGCUGCUUCCaucgucGCUGCUGc -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAAGG------CGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.