miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10290 3' -58.1 NC_002687.1 + 291336 0.85 0.138639
Target:  5'- -gUAGCUGCUGCCGCUgcugcugCUGCUGCCGc -3'
miRNA:   3'- guGUCGACGAUGGCGAa------GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 69451 0.68 0.881603
Target:  5'- gACAGCgcgUGCU-CCGCUUUCGCaGgCGg -3'
miRNA:   3'- gUGUCG---ACGAuGGCGAAGGCGaCgGC- -5'
10290 3' -58.1 NC_002687.1 + 126341 0.67 0.90659
Target:  5'- uGCAGCUGC-ACC-CU--CGCUGCUGa -3'
miRNA:   3'- gUGUCGACGaUGGcGAagGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 8284 0.66 0.946431
Target:  5'- gCGCAGCUGUcggaUGCUGCUggcgggcaCCGUUuucccGCCGg -3'
miRNA:   3'- -GUGUCGACG----AUGGCGAa-------GGCGA-----CGGC- -5'
10290 3' -58.1 NC_002687.1 + 277395 0.74 0.543566
Target:  5'- cCGC-GCUGCUACUGCUgCCgaGCUGCUGa -3'
miRNA:   3'- -GUGuCGACGAUGGCGAaGG--CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 226546 0.74 0.581654
Target:  5'- gACGGCUGggACCGCUgggaCCGCUGggaCCGa -3'
miRNA:   3'- gUGUCGACgaUGGCGAa---GGCGAC---GGC- -5'
10290 3' -58.1 NC_002687.1 + 152904 0.73 0.624132
Target:  5'- cCGCuGCUGCUGCUGCUguggaagucccugcuUCCGUcgcuuuguugguUGCCGa -3'
miRNA:   3'- -GUGuCGACGAUGGCGA---------------AGGCG------------ACGGC- -5'
10290 3' -58.1 NC_002687.1 + 311865 0.72 0.658987
Target:  5'- ---cGCUGCUccGCCGCUcgcuUCCGUUGUCGu -3'
miRNA:   3'- guguCGACGA--UGGCGA----AGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 113724 0.7 0.762445
Target:  5'- gACGGCg---ACCGCgauuaCCGCUGCCGc -3'
miRNA:   3'- gUGUCGacgaUGGCGaa---GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 48039 0.68 0.87485
Target:  5'- aGCAGCUGCUGCUGU---UGCUGUa- -3'
miRNA:   3'- gUGUCGACGAUGGCGaagGCGACGgc -5'
10290 3' -58.1 NC_002687.1 + 322969 0.7 0.771385
Target:  5'- gUACuGCUGCUGCUGCU---GUUGCCGu -3'
miRNA:   3'- -GUGuCGACGAUGGCGAaggCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 275109 0.71 0.741503
Target:  5'- uCACGGC-GCUACaCGUUUCCGCuaaaaacggucacgUGCUGg -3'
miRNA:   3'- -GUGUCGaCGAUG-GCGAAGGCG--------------ACGGC- -5'
10290 3' -58.1 NC_002687.1 + 302843 0.79 0.299468
Target:  5'- cUACAGCUGCUGCUgguguuGCUUCUGCUGgCGu -3'
miRNA:   3'- -GUGUCGACGAUGG------CGAAGGCGACgGC- -5'
10290 3' -58.1 NC_002687.1 + 114220 0.69 0.805955
Target:  5'- cCAUGGCUGUccCCGCUUgcaacaagCCGUUGCCa -3'
miRNA:   3'- -GUGUCGACGauGGCGAA--------GGCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 291365 0.75 0.488122
Target:  5'- nGCuGCUGCUACUGUUgCUGCUGCUGc -3'
miRNA:   3'- gUGuCGACGAUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 292438 0.72 0.668639
Target:  5'- cCGCGGCcGCcACCGCUUCCaGUUGgCGa -3'
miRNA:   3'- -GUGUCGaCGaUGGCGAAGG-CGACgGC- -5'
10290 3' -58.1 NC_002687.1 + 145568 0.69 0.83827
Target:  5'- --aAGCUGUacgUGCCGCUUCCGUU-CUGg -3'
miRNA:   3'- gugUCGACG---AUGGCGAAGGCGAcGGC- -5'
10290 3' -58.1 NC_002687.1 + 281765 0.67 0.894507
Target:  5'- gGCAGC-GCaaGCCGCUcCCGUUGCgCGu -3'
miRNA:   3'- gUGUCGaCGa-UGGCGAaGGCGACG-GC- -5'
10290 3' -58.1 NC_002687.1 + 297988 0.75 0.515544
Target:  5'- uGCGGCcGCcACCGCUUCCGaCUGgCGa -3'
miRNA:   3'- gUGUCGaCGaUGGCGAAGGC-GACgGC- -5'
10290 3' -58.1 NC_002687.1 + 57669 0.73 0.624132
Target:  5'- gCACAGCcgugUGCUAUCgauagacaacgguauGCUUCUGCUGUCGg -3'
miRNA:   3'- -GUGUCG----ACGAUGG---------------CGAAGGCGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.