miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10290 3' -58.1 NC_002687.1 + 12552 1.07 0.004852
Target:  5'- cCACAGCUGCUACCGCUUCCGCUGCCGc -3'
miRNA:   3'- -GUGUCGACGAUGGCGAAGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 291336 0.85 0.138639
Target:  5'- -gUAGCUGCUGCCGCUgcugcugCUGCUGCCGc -3'
miRNA:   3'- guGUCGACGAUGGCGAa------GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 11765 0.81 0.244824
Target:  5'- cCGCuGCUGCcACCGCUaCCGCUGCUGc -3'
miRNA:   3'- -GUGuCGACGaUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 208551 0.81 0.250462
Target:  5'- uCGCuGCUGCUGCUGCUgCUGCUGCUGc -3'
miRNA:   3'- -GUGuCGACGAUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 283537 0.8 0.26802
Target:  5'- cCGCcccuGUUGCUGCCGCUUCggaUGCUGCCGa -3'
miRNA:   3'- -GUGu---CGACGAUGGCGAAG---GCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 11735 0.8 0.286557
Target:  5'- cCGCGGCuacUGCUACCGCggcuUCUGCUGCUGc -3'
miRNA:   3'- -GUGUCG---ACGAUGGCGa---AGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 302843 0.79 0.299468
Target:  5'- cUACAGCUGCUGCUgguguuGCUUCUGCUGgCGu -3'
miRNA:   3'- -GUGUCGACGAUGG------CGAAGGCGACgGC- -5'
10290 3' -58.1 NC_002687.1 + 11870 0.79 0.31967
Target:  5'- uCGCAGCUGCUAuaGCcgCCGCUGCUa -3'
miRNA:   3'- -GUGUCGACGAUggCGaaGGCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 224827 0.78 0.340877
Target:  5'- --aAGCUggccacgaGCUGCCGCUgCCGCUGCCGc -3'
miRNA:   3'- gugUCGA--------CGAUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 223903 0.76 0.42703
Target:  5'- aACuGCUGCUGuuGCUgUCGCUGCCa -3'
miRNA:   3'- gUGuCGACGAUggCGAaGGCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 293901 0.76 0.470228
Target:  5'- gGgGGCUGCUGCUGUcgCUGCUGCUGu -3'
miRNA:   3'- gUgUCGACGAUGGCGaaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 291365 0.75 0.488122
Target:  5'- nGCuGCUGCUACUGUUgCUGCUGCUGc -3'
miRNA:   3'- gUGuCGACGAUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 297988 0.75 0.515544
Target:  5'- uGCGGCcGCcACCGCUUCCGaCUGgCGa -3'
miRNA:   3'- gUGUCGaCGaUGGCGAAGGC-GACgGC- -5'
10290 3' -58.1 NC_002687.1 + 277395 0.74 0.543566
Target:  5'- cCGC-GCUGCUACUGCUgCCgaGCUGCUGa -3'
miRNA:   3'- -GUGuCGACGAUGGCGAaGG--CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 138337 0.74 0.562523
Target:  5'- gCGCGGCUGCUGCUGUggagaggCCGC-GUCGg -3'
miRNA:   3'- -GUGUCGACGAUGGCGaa-----GGCGaCGGC- -5'
10290 3' -58.1 NC_002687.1 + 10404 0.74 0.562523
Target:  5'- cUACuGCUGCUGCUGCUgccaccacuUCCGC-GCCa -3'
miRNA:   3'- -GUGuCGACGAUGGCGA---------AGGCGaCGGc -5'
10290 3' -58.1 NC_002687.1 + 11686 0.74 0.581654
Target:  5'- uGCuccuGCUGCcGCCGCUaCUGCUGCUGc -3'
miRNA:   3'- gUGu---CGACGaUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 226546 0.74 0.581654
Target:  5'- gACGGCUGggACCGCUgggaCCGCUGggaCCGa -3'
miRNA:   3'- gUGUCGACgaUGGCGAa---GGCGAC---GGC- -5'
10290 3' -58.1 NC_002687.1 + 152904 0.73 0.624132
Target:  5'- cCGCuGCUGCUGCUGCUguggaagucccugcuUCCGUcgcuuuguugguUGCCGa -3'
miRNA:   3'- -GUGuCGACGAUGGCGA---------------AGGCG------------ACGGC- -5'
10290 3' -58.1 NC_002687.1 + 57669 0.73 0.624132
Target:  5'- gCACAGCcgugUGCUAUCgauagacaacgguauGCUUCUGCUGUCGg -3'
miRNA:   3'- -GUGUCG----ACGAUGG---------------CGAAGGCGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.