miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10290 3' -58.1 NC_002687.1 + 282535 0.72 0.650284
Target:  5'- aACAGCcGCcGCCGCaggcccuacucccgCCGCUGCCGc -3'
miRNA:   3'- gUGUCGaCGaUGGCGaa------------GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 311865 0.72 0.658987
Target:  5'- ---cGCUGCUccGCCGCUcgcuUCCGUUGUCGu -3'
miRNA:   3'- guguCGACGA--UGGCGA----AGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 292438 0.72 0.668639
Target:  5'- cCGCGGCcGCcACCGCUUCCaGUUGgCGa -3'
miRNA:   3'- -GUGUCGaCGaUGGCGAAGG-CGACgGC- -5'
10290 3' -58.1 NC_002687.1 + 11804 0.71 0.697404
Target:  5'- cCACGGUUGCUacuacacccgcuACUGCUaCUGCUGCUGn -3'
miRNA:   3'- -GUGUCGACGA------------UGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 102811 0.71 0.706905
Target:  5'- cCGCuGCUGCgccugucucUGCUGCaUCUGCUGCUGg -3'
miRNA:   3'- -GUGuCGACG---------AUGGCGaAGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 284704 0.71 0.716349
Target:  5'- uCACuGCgaUGUUGCCGCUUCgaaUGCUGCUGc -3'
miRNA:   3'- -GUGuCG--ACGAUGGCGAAG---GCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 279485 0.71 0.716349
Target:  5'- cCACuGgUGCUcUUGCUaCCGCUGCCGa -3'
miRNA:   3'- -GUGuCgACGAuGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 208928 0.71 0.735035
Target:  5'- uCGCuGCUGCUuccaucgucgcuGCUGCUUCCaucaucucuGCUGCCu -3'
miRNA:   3'- -GUGuCGACGA------------UGGCGAAGG---------CGACGGc -5'
10290 3' -58.1 NC_002687.1 + 275109 0.71 0.741503
Target:  5'- uCACGGC-GCUACaCGUUUCCGCuaaaaacggucacgUGCUGg -3'
miRNA:   3'- -GUGUCGaCGAUG-GCGAAGGCG--------------ACGGC- -5'
10290 3' -58.1 NC_002687.1 + 102945 0.7 0.753402
Target:  5'- uGCuGCUGCUGuuGCUguugCUGUUGCUGc -3'
miRNA:   3'- gUGuCGACGAUggCGAa---GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 24034 0.7 0.753402
Target:  5'- uGCAGgUGCcGCUaCUUCUGCUGCUGg -3'
miRNA:   3'- gUGUCgACGaUGGcGAAGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 113724 0.7 0.762445
Target:  5'- gACGGCg---ACCGCgauuaCCGCUGCCGc -3'
miRNA:   3'- gUGUCGacgaUGGCGaa---GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 208602 0.7 0.766034
Target:  5'- uCACuGCUGCUuccaucgucgucgcuGCUGCUUCCaucgucGCUGCUGc -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAAGG------CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 208749 0.7 0.766034
Target:  5'- uCACuGCUGCUuccaucgucgucgcuGCUGCUUCCaucgucGCUGCUGc -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAAGG------CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 322969 0.7 0.771385
Target:  5'- gUACuGCUGCUGCUGCU---GUUGCCGu -3'
miRNA:   3'- -GUGuCGACGAUGGCGAaggCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 300226 0.7 0.771385
Target:  5'- gCACcGUUGgUACCGCUUCCaCcGCCGa -3'
miRNA:   3'- -GUGuCGACgAUGGCGAAGGcGaCGGC- -5'
10290 3' -58.1 NC_002687.1 + 10769 0.7 0.780213
Target:  5'- aCACAcccCUGCUGCaaccacgguCGCgUCCGCUGCCu -3'
miRNA:   3'- -GUGUc--GACGAUG---------GCGaAGGCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 10650 0.7 0.797506
Target:  5'- cUACcuCUGCUACCGCUUCUuCUGCa- -3'
miRNA:   3'- -GUGucGACGAUGGCGAAGGcGACGgc -5'
10290 3' -58.1 NC_002687.1 + 114220 0.69 0.805955
Target:  5'- cCAUGGCUGUccCCGCUUgcaacaagCCGUUGCCa -3'
miRNA:   3'- -GUGUCGACGauGGCGAA--------GGCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 284268 0.69 0.833584
Target:  5'- cCGCcGCUGCUggcucacaagccccaGCCGCUgCUGCUGCg- -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAaGGCGACGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.