miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10290 3' -58.1 NC_002687.1 + 102811 0.71 0.706905
Target:  5'- cCGCuGCUGCgccugucucUGCUGCaUCUGCUGCUGg -3'
miRNA:   3'- -GUGuCGACG---------AUGGCGaAGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 102895 0.66 0.946431
Target:  5'- uCGCuguuGCUGUUGCUGCUguugUUGUUGCUGc -3'
miRNA:   3'- -GUGu---CGACGAUGGCGAa---GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 102945 0.7 0.753402
Target:  5'- uGCuGCUGCUGuuGCUguugCUGUUGCUGc -3'
miRNA:   3'- gUGuCGACGAUggCGAa---GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 113724 0.7 0.762445
Target:  5'- gACGGCg---ACCGCgauuaCCGCUGCCGc -3'
miRNA:   3'- gUGUCGacgaUGGCGaa---GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 114220 0.69 0.805955
Target:  5'- cCAUGGCUGUccCCGCUUgcaacaagCCGUUGCCa -3'
miRNA:   3'- -GUGUCGACGauGGCGAA--------GGCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 126341 0.67 0.90659
Target:  5'- uGCAGCUGC-ACC-CU--CGCUGCUGa -3'
miRNA:   3'- gUGUCGACGaUGGcGAagGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 138337 0.74 0.562523
Target:  5'- gCGCGGCUGCUGCUGUggagaggCCGC-GUCGg -3'
miRNA:   3'- -GUGUCGACGAUGGCGaa-----GGCGaCGGC- -5'
10290 3' -58.1 NC_002687.1 + 145568 0.69 0.83827
Target:  5'- --aAGCUGUacgUGCCGCUUCCGUU-CUGg -3'
miRNA:   3'- gugUCGACG---AUGGCGAAGGCGAcGGC- -5'
10290 3' -58.1 NC_002687.1 + 152904 0.73 0.624132
Target:  5'- cCGCuGCUGCUGCUGCUguggaagucccugcuUCCGUcgcuuuguugguUGCCGa -3'
miRNA:   3'- -GUGuCGACGAUGGCGA---------------AGGCG------------ACGGC- -5'
10290 3' -58.1 NC_002687.1 + 158803 0.66 0.942197
Target:  5'- gCACGGCgGCgacaacgacggACCGCcgUCGCcGCCGg -3'
miRNA:   3'- -GUGUCGaCGa----------UGGCGaaGGCGaCGGC- -5'
10290 3' -58.1 NC_002687.1 + 160310 0.69 0.83827
Target:  5'- gGCGGCgGCUGCCuuggccgccccgGCUUCCuuUGCCu -3'
miRNA:   3'- gUGUCGaCGAUGG------------CGAAGGcgACGGc -5'
10290 3' -58.1 NC_002687.1 + 174000 0.69 0.845945
Target:  5'- cCACGuacGUUACCGCUUCCGCguccGCCu -3'
miRNA:   3'- -GUGUcgaCGAUGGCGAAGGCGa---CGGc -5'
10290 3' -58.1 NC_002687.1 + 208551 0.81 0.250462
Target:  5'- uCGCuGCUGCUGCUGCUgCUGCUGCUGc -3'
miRNA:   3'- -GUGuCGACGAUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 208602 0.7 0.766034
Target:  5'- uCACuGCUGCUuccaucgucgucgcuGCUGCUUCCaucgucGCUGCUGc -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAAGG------CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 208749 0.7 0.766034
Target:  5'- uCACuGCUGCUuccaucgucgucgcuGCUGCUUCCaucgucGCUGCUGc -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAAGG------CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 208880 0.67 0.894507
Target:  5'- cCAUcGUcGCUGCUGCUUCCaucgucGCUGCUGu -3'
miRNA:   3'- -GUGuCGaCGAUGGCGAAGG------CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 208928 0.71 0.735035
Target:  5'- uCGCuGCUGCUuccaucgucgcuGCUGCUUCCaucaucucuGCUGCCu -3'
miRNA:   3'- -GUGuCGACGA------------UGGCGAAGG---------CGACGGc -5'
10290 3' -58.1 NC_002687.1 + 210387 0.66 0.937751
Target:  5'- uGCAGCUGCaccACUGCca-CGaCUGCCa -3'
miRNA:   3'- gUGUCGACGa--UGGCGaagGC-GACGGc -5'
10290 3' -58.1 NC_002687.1 + 223903 0.76 0.42703
Target:  5'- aACuGCUGCUGuuGCUgUCGCUGCCa -3'
miRNA:   3'- gUGuCGACGAUggCGAaGGCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 224827 0.78 0.340877
Target:  5'- --aAGCUggccacgaGCUGCCGCUgCCGCUGCCGc -3'
miRNA:   3'- gugUCGA--------CGAUGGCGAaGGCGACGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.