miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10290 3' -58.1 NC_002687.1 + 8284 0.66 0.946431
Target:  5'- gCGCAGCUGUcggaUGCUGCUggcgggcaCCGUUuucccGCCGg -3'
miRNA:   3'- -GUGUCGACG----AUGGCGAa-------GGCGA-----CGGC- -5'
10290 3' -58.1 NC_002687.1 + 10404 0.74 0.562523
Target:  5'- cUACuGCUGCUGCUGCUgccaccacuUCCGC-GCCa -3'
miRNA:   3'- -GUGuCGACGAUGGCGA---------AGGCGaCGGc -5'
10290 3' -58.1 NC_002687.1 + 10650 0.7 0.797506
Target:  5'- cUACcuCUGCUACCGCUUCUuCUGCa- -3'
miRNA:   3'- -GUGucGACGAUGGCGAAGGcGACGgc -5'
10290 3' -58.1 NC_002687.1 + 10686 0.67 0.90659
Target:  5'- cCACAaCUGCcGCCGCcacugCCGCcGCCa -3'
miRNA:   3'- -GUGUcGACGaUGGCGaa---GGCGaCGGc -5'
10290 3' -58.1 NC_002687.1 + 10769 0.7 0.780213
Target:  5'- aCACAcccCUGCUGCaaccacgguCGCgUCCGCUGCCu -3'
miRNA:   3'- -GUGUc--GACGAUG---------GCGaAGGCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 11686 0.74 0.581654
Target:  5'- uGCuccuGCUGCcGCCGCUaCUGCUGCUGc -3'
miRNA:   3'- gUGu---CGACGaUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 11735 0.8 0.286557
Target:  5'- cCGCGGCuacUGCUACCGCggcuUCUGCUGCUGc -3'
miRNA:   3'- -GUGUCG---ACGAUGGCGa---AGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 11765 0.81 0.244824
Target:  5'- cCGCuGCUGCcACCGCUaCCGCUGCUGc -3'
miRNA:   3'- -GUGuCGACGaUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 11804 0.71 0.697404
Target:  5'- cCACGGUUGCUacuacacccgcuACUGCUaCUGCUGCUGn -3'
miRNA:   3'- -GUGUCGACGA------------UGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 11870 0.79 0.31967
Target:  5'- uCGCAGCUGCUAuaGCcgCCGCUGCUa -3'
miRNA:   3'- -GUGUCGACGAUggCGaaGGCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 12552 1.07 0.004852
Target:  5'- cCACAGCUGCUACCGCUUCCGCUGCCGc -3'
miRNA:   3'- -GUGUCGACGAUGGCGAAGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 13391 0.68 0.877575
Target:  5'- --uGGuCUGCUACCcuGCUgccuuucaccagcucUCUGCUGCCGu -3'
miRNA:   3'- gugUC-GACGAUGG--CGA---------------AGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 22995 0.66 0.92822
Target:  5'- uGCGGUUGCUucaACCGCgucCCGUgagcGCCu -3'
miRNA:   3'- gUGUCGACGA---UGGCGaa-GGCGa---CGGc -5'
10290 3' -58.1 NC_002687.1 + 24034 0.7 0.753402
Target:  5'- uGCAGgUGCcGCUaCUUCUGCUGCUGg -3'
miRNA:   3'- gUGUCgACGaUGGcGAAGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 25417 0.66 0.926716
Target:  5'- gCACGGCggUGCaggagUACCGCUacgacggcguacacUCCGCggaugugGCCGu -3'
miRNA:   3'- -GUGUCG--ACG-----AUGGCGA--------------AGGCGa------CGGC- -5'
10290 3' -58.1 NC_002687.1 + 39612 0.68 0.867904
Target:  5'- aCGCAGgUG--ACCGcCUUCgGCUGCCa -3'
miRNA:   3'- -GUGUCgACgaUGGC-GAAGgCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 48039 0.68 0.87485
Target:  5'- aGCAGCUGCUGCUGU---UGCUGUa- -3'
miRNA:   3'- gUGUCGACGAUGGCGaagGCGACGgc -5'
10290 3' -58.1 NC_002687.1 + 57669 0.73 0.624132
Target:  5'- gCACAGCcgugUGCUAUCgauagacaacgguauGCUUCUGCUGUCGg -3'
miRNA:   3'- -GUGUCG----ACGAUGG---------------CGAAGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 69451 0.68 0.881603
Target:  5'- gACAGCgcgUGCU-CCGCUUUCGCaGgCGg -3'
miRNA:   3'- gUGUCG---ACGAuGGCGAAGGCGaCgGC- -5'
10290 3' -58.1 NC_002687.1 + 77734 0.67 0.917832
Target:  5'- --uGGgUGCUGCCGUUUCagaCGCcGCCGc -3'
miRNA:   3'- gugUCgACGAUGGCGAAG---GCGaCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.