miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10290 3' -58.1 NC_002687.1 + 331443 0.66 0.946431
Target:  5'- aGCAGCUGUcuCUGCUUCUGUauCCGu -3'
miRNA:   3'- gUGUCGACGauGGCGAAGGCGacGGC- -5'
10290 3' -58.1 NC_002687.1 + 322969 0.7 0.771385
Target:  5'- gUACuGCUGCUGCUGCU---GUUGCCGu -3'
miRNA:   3'- -GUGuCGACGAUGGCGAaggCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 319287 0.66 0.933092
Target:  5'- aCAUAGCUGCgUGCC-CUUCCGa--CCGc -3'
miRNA:   3'- -GUGUCGACG-AUGGcGAAGGCgacGGC- -5'
10290 3' -58.1 NC_002687.1 + 311865 0.72 0.658987
Target:  5'- ---cGCUGCUccGCCGCUcgcuUCCGUUGUCGu -3'
miRNA:   3'- guguCGACGA--UGGCGA----AGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 304249 0.67 0.90659
Target:  5'- uCGCAGCUcagagcGCUACUGCUgCUGCaGCUa -3'
miRNA:   3'- -GUGUCGA------CGAUGGCGAaGGCGaCGGc -5'
10290 3' -58.1 NC_002687.1 + 304219 0.66 0.937751
Target:  5'- nUACGGUUGCU-CCggggGCUaggcCCGCUGCUGu -3'
miRNA:   3'- -GUGUCGACGAuGG----CGAa---GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 302843 0.79 0.299468
Target:  5'- cUACAGCUGCUGCUgguguuGCUUCUGCUGgCGu -3'
miRNA:   3'- -GUGUCGACGAUGG------CGAAGGCGACgGC- -5'
10290 3' -58.1 NC_002687.1 + 300226 0.7 0.771385
Target:  5'- gCACcGUUGgUACCGCUUCCaCcGCCGa -3'
miRNA:   3'- -GUGuCGACgAUGGCGAAGGcGaCGGC- -5'
10290 3' -58.1 NC_002687.1 + 298278 0.66 0.933092
Target:  5'- gACGGUUGUUGCgUGCggCUGgaGCCGa -3'
miRNA:   3'- gUGUCGACGAUG-GCGaaGGCgaCGGC- -5'
10290 3' -58.1 NC_002687.1 + 298246 0.68 0.877575
Target:  5'- uCACGGCcuuuuuuauuccuguUGCUACUGUUcgCCGCaGCCa -3'
miRNA:   3'- -GUGUCG---------------ACGAUGGCGAa-GGCGaCGGc -5'
10290 3' -58.1 NC_002687.1 + 297988 0.75 0.515544
Target:  5'- uGCGGCcGCcACCGCUUCCGaCUGgCGa -3'
miRNA:   3'- gUGUCGaCGaUGGCGAAGGC-GACgGC- -5'
10290 3' -58.1 NC_002687.1 + 296066 0.67 0.912317
Target:  5'- gCACGGCaucaGCc-CCGCUgcUCCGCUGCa- -3'
miRNA:   3'- -GUGUCGa---CGauGGCGA--AGGCGACGgc -5'
10290 3' -58.1 NC_002687.1 + 293901 0.76 0.470228
Target:  5'- gGgGGCUGCUGCUGUcgCUGCUGCUGu -3'
miRNA:   3'- gUgUCGACGAUGGCGaaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 292438 0.72 0.668639
Target:  5'- cCGCGGCcGCcACCGCUUCCaGUUGgCGa -3'
miRNA:   3'- -GUGUCGaCGaUGGCGAAGG-CGACgGC- -5'
10290 3' -58.1 NC_002687.1 + 291382 0.66 0.934982
Target:  5'- gGCAGCUGCuUuuguguuuuuuuauuGCCGC--CCGC-GCCGg -3'
miRNA:   3'- gUGUCGACG-A---------------UGGCGaaGGCGaCGGC- -5'
10290 3' -58.1 NC_002687.1 + 291365 0.75 0.488122
Target:  5'- nGCuGCUGCUACUGUUgCUGCUGCUGc -3'
miRNA:   3'- gUGuCGACGAUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 291336 0.85 0.138639
Target:  5'- -gUAGCUGCUGCCGCUgcugcugCUGCUGCCGc -3'
miRNA:   3'- guGUCGACGAUGGCGAa------GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 284704 0.71 0.716349
Target:  5'- uCACuGCgaUGUUGCCGCUUCgaaUGCUGCUGc -3'
miRNA:   3'- -GUGuCG--ACGAUGGCGAAG---GCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 284268 0.69 0.833584
Target:  5'- cCGCcGCUGCUggcucacaagccccaGCCGCUgCUGCUGCg- -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAaGGCGACGgc -5'
10290 3' -58.1 NC_002687.1 + 283537 0.8 0.26802
Target:  5'- cCGCcccuGUUGCUGCCGCUUCggaUGCUGCCGa -3'
miRNA:   3'- -GUGu---CGACGAUGGCGAAG---GCGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.