Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 145568 | 0.69 | 0.83827 |
Target: 5'- --aAGCUGUacgUGCCGCUUCCGUU-CUGg -3' miRNA: 3'- gugUCGACG---AUGGCGAAGGCGAcGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 160310 | 0.69 | 0.83827 |
Target: 5'- gGCGGCgGCUGCCuuggccgccccgGCUUCCuuUGCCu -3' miRNA: 3'- gUGUCGaCGAUGG------------CGAAGGcgACGGc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 174000 | 0.69 | 0.845945 |
Target: 5'- cCACGuacGUUACCGCUUCCGCguccGCCu -3' miRNA: 3'- -GUGUcgaCGAUGGCGAAGGCGa---CGGc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 39612 | 0.68 | 0.867904 |
Target: 5'- aCGCAGgUG--ACCGcCUUCgGCUGCCa -3' miRNA: 3'- -GUGUCgACgaUGGC-GAAGgCGACGGc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 48039 | 0.68 | 0.87485 |
Target: 5'- aGCAGCUGCUGCUGU---UGCUGUa- -3' miRNA: 3'- gUGUCGACGAUGGCGaagGCGACGgc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 298246 | 0.68 | 0.877575 |
Target: 5'- uCACGGCcuuuuuuauuccuguUGCUACUGUUcgCCGCaGCCa -3' miRNA: 3'- -GUGUCG---------------ACGAUGGCGAa-GGCGaCGGc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 13391 | 0.68 | 0.877575 |
Target: 5'- --uGGuCUGCUACCcuGCUgccuuucaccagcucUCUGCUGCCGu -3' miRNA: 3'- gugUC-GACGAUGG--CGA---------------AGGCGACGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 282425 | 0.68 | 0.881603 |
Target: 5'- cCGCcGCUGCUGCCaCUacggCCcCUGCCGc -3' miRNA: 3'- -GUGuCGACGAUGGcGAa---GGcGACGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 69451 | 0.68 | 0.881603 |
Target: 5'- gACAGCgcgUGCU-CCGCUUUCGCaGgCGg -3' miRNA: 3'- gUGUCG---ACGAuGGCGAAGGCGaCgGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 208880 | 0.67 | 0.894507 |
Target: 5'- cCAUcGUcGCUGCUGCUUCCaucgucGCUGCUGu -3' miRNA: 3'- -GUGuCGaCGAUGGCGAAGG------CGACGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 281765 | 0.67 | 0.894507 |
Target: 5'- gGCAGC-GCaaGCCGCUcCCGUUGCgCGu -3' miRNA: 3'- gUGUCGaCGa-UGGCGAaGGCGACG-GC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 283306 | 0.67 | 0.900653 |
Target: 5'- ---uGCUGUUGCUGUUcCUGCUGCUGc -3' miRNA: 3'- guguCGACGAUGGCGAaGGCGACGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 10686 | 0.67 | 0.90659 |
Target: 5'- cCACAaCUGCcGCCGCcacugCCGCcGCCa -3' miRNA: 3'- -GUGUcGACGaUGGCGaa---GGCGaCGGc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 304249 | 0.67 | 0.90659 |
Target: 5'- uCGCAGCUcagagcGCUACUGCUgCUGCaGCUa -3' miRNA: 3'- -GUGUCGA------CGAUGGCGAaGGCGaCGGc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 126341 | 0.67 | 0.90659 |
Target: 5'- uGCAGCUGC-ACC-CU--CGCUGCUGa -3' miRNA: 3'- gUGUCGACGaUGGcGAagGCGACGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 296066 | 0.67 | 0.912317 |
Target: 5'- gCACGGCaucaGCc-CCGCUgcUCCGCUGCa- -3' miRNA: 3'- -GUGUCGa---CGauGGCGA--AGGCGACGgc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 77734 | 0.67 | 0.917832 |
Target: 5'- --uGGgUGCUGCCGUUUCagaCGCcGCCGc -3' miRNA: 3'- gugUCgACGAUGGCGAAG---GCGaCGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 25417 | 0.66 | 0.926716 |
Target: 5'- gCACGGCggUGCaggagUACCGCUacgacggcguacacUCCGCggaugugGCCGu -3' miRNA: 3'- -GUGUCG--ACG-----AUGGCGA--------------AGGCGa------CGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 276333 | 0.66 | 0.927721 |
Target: 5'- aCACAGCaUGa-ACCGCgUCCacuugcaucagcaGCUGCCGc -3' miRNA: 3'- -GUGUCG-ACgaUGGCGaAGG-------------CGACGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 270393 | 0.66 | 0.92822 |
Target: 5'- -cCAGCUGCUgcauacaauccACCGUUUCCgGCaGCgGg -3' miRNA: 3'- guGUCGACGA-----------UGGCGAAGG-CGaCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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