Results 41 - 60 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 24034 | 0.7 | 0.753402 |
Target: 5'- uGCAGgUGCcGCUaCUUCUGCUGCUGg -3' miRNA: 3'- gUGUCgACGaUGGcGAAGGCGACGGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 102945 | 0.7 | 0.753402 |
Target: 5'- uGCuGCUGCUGuuGCUguugCUGUUGCUGc -3' miRNA: 3'- gUGuCGACGAUggCGAa---GGCGACGGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 275109 | 0.71 | 0.741503 |
Target: 5'- uCACGGC-GCUACaCGUUUCCGCuaaaaacggucacgUGCUGg -3' miRNA: 3'- -GUGUCGaCGAUG-GCGAAGGCG--------------ACGGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 208928 | 0.71 | 0.735035 |
Target: 5'- uCGCuGCUGCUuccaucgucgcuGCUGCUUCCaucaucucuGCUGCCu -3' miRNA: 3'- -GUGuCGACGA------------UGGCGAAGG---------CGACGGc -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 284704 | 0.71 | 0.716349 |
Target: 5'- uCACuGCgaUGUUGCCGCUUCgaaUGCUGCUGc -3' miRNA: 3'- -GUGuCG--ACGAUGGCGAAG---GCGACGGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 279485 | 0.71 | 0.716349 |
Target: 5'- cCACuGgUGCUcUUGCUaCCGCUGCCGa -3' miRNA: 3'- -GUGuCgACGAuGGCGAaGGCGACGGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 102811 | 0.71 | 0.706905 |
Target: 5'- cCGCuGCUGCgccugucucUGCUGCaUCUGCUGCUGg -3' miRNA: 3'- -GUGuCGACG---------AUGGCGaAGGCGACGGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 11804 | 0.71 | 0.697404 |
Target: 5'- cCACGGUUGCUacuacacccgcuACUGCUaCUGCUGCUGn -3' miRNA: 3'- -GUGUCGACGA------------UGGCGAaGGCGACGGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 292438 | 0.72 | 0.668639 |
Target: 5'- cCGCGGCcGCcACCGCUUCCaGUUGgCGa -3' miRNA: 3'- -GUGUCGaCGaUGGCGAAGG-CGACgGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 311865 | 0.72 | 0.658987 |
Target: 5'- ---cGCUGCUccGCCGCUcgcuUCCGUUGUCGu -3' miRNA: 3'- guguCGACGA--UGGCGA----AGGCGACGGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 282535 | 0.72 | 0.650284 |
Target: 5'- aACAGCcGCcGCCGCaggcccuacucccgCCGCUGCCGc -3' miRNA: 3'- gUGUCGaCGaUGGCGaa------------GGCGACGGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 152904 | 0.73 | 0.624132 |
Target: 5'- cCGCuGCUGCUGCUGCUguggaagucccugcuUCCGUcgcuuuguugguUGCCGa -3' miRNA: 3'- -GUGuCGACGAUGGCGA---------------AGGCG------------ACGGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 57669 | 0.73 | 0.624132 |
Target: 5'- gCACAGCcgugUGCUAUCgauagacaacgguauGCUUCUGCUGUCGg -3' miRNA: 3'- -GUGUCG----ACGAUGG---------------CGAAGGCGACGGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 226546 | 0.74 | 0.581654 |
Target: 5'- gACGGCUGggACCGCUgggaCCGCUGggaCCGa -3' miRNA: 3'- gUGUCGACgaUGGCGAa---GGCGAC---GGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 11686 | 0.74 | 0.581654 |
Target: 5'- uGCuccuGCUGCcGCCGCUaCUGCUGCUGc -3' miRNA: 3'- gUGu---CGACGaUGGCGAaGGCGACGGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 138337 | 0.74 | 0.562523 |
Target: 5'- gCGCGGCUGCUGCUGUggagaggCCGC-GUCGg -3' miRNA: 3'- -GUGUCGACGAUGGCGaa-----GGCGaCGGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 10404 | 0.74 | 0.562523 |
Target: 5'- cUACuGCUGCUGCUGCUgccaccacuUCCGC-GCCa -3' miRNA: 3'- -GUGuCGACGAUGGCGA---------AGGCGaCGGc -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 277395 | 0.74 | 0.543566 |
Target: 5'- cCGC-GCUGCUACUGCUgCCgaGCUGCUGa -3' miRNA: 3'- -GUGuCGACGAUGGCGAaGG--CGACGGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 297988 | 0.75 | 0.515544 |
Target: 5'- uGCGGCcGCcACCGCUUCCGaCUGgCGa -3' miRNA: 3'- gUGUCGaCGaUGGCGAAGGC-GACgGC- -5' |
|||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 291365 | 0.75 | 0.488122 |
Target: 5'- nGCuGCUGCUACUGUUgCUGCUGCUGc -3' miRNA: 3'- gUGuCGACGAUGGCGAaGGCGACGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home