miRNA display CGI


Results 41 - 60 of 71 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10290 3' -58.1 NC_002687.1 + 24034 0.7 0.753402
Target:  5'- uGCAGgUGCcGCUaCUUCUGCUGCUGg -3'
miRNA:   3'- gUGUCgACGaUGGcGAAGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 102945 0.7 0.753402
Target:  5'- uGCuGCUGCUGuuGCUguugCUGUUGCUGc -3'
miRNA:   3'- gUGuCGACGAUggCGAa---GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 275109 0.71 0.741503
Target:  5'- uCACGGC-GCUACaCGUUUCCGCuaaaaacggucacgUGCUGg -3'
miRNA:   3'- -GUGUCGaCGAUG-GCGAAGGCG--------------ACGGC- -5'
10290 3' -58.1 NC_002687.1 + 208928 0.71 0.735035
Target:  5'- uCGCuGCUGCUuccaucgucgcuGCUGCUUCCaucaucucuGCUGCCu -3'
miRNA:   3'- -GUGuCGACGA------------UGGCGAAGG---------CGACGGc -5'
10290 3' -58.1 NC_002687.1 + 284704 0.71 0.716349
Target:  5'- uCACuGCgaUGUUGCCGCUUCgaaUGCUGCUGc -3'
miRNA:   3'- -GUGuCG--ACGAUGGCGAAG---GCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 279485 0.71 0.716349
Target:  5'- cCACuGgUGCUcUUGCUaCCGCUGCCGa -3'
miRNA:   3'- -GUGuCgACGAuGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 102811 0.71 0.706905
Target:  5'- cCGCuGCUGCgccugucucUGCUGCaUCUGCUGCUGg -3'
miRNA:   3'- -GUGuCGACG---------AUGGCGaAGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 11804 0.71 0.697404
Target:  5'- cCACGGUUGCUacuacacccgcuACUGCUaCUGCUGCUGn -3'
miRNA:   3'- -GUGUCGACGA------------UGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 292438 0.72 0.668639
Target:  5'- cCGCGGCcGCcACCGCUUCCaGUUGgCGa -3'
miRNA:   3'- -GUGUCGaCGaUGGCGAAGG-CGACgGC- -5'
10290 3' -58.1 NC_002687.1 + 311865 0.72 0.658987
Target:  5'- ---cGCUGCUccGCCGCUcgcuUCCGUUGUCGu -3'
miRNA:   3'- guguCGACGA--UGGCGA----AGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 282535 0.72 0.650284
Target:  5'- aACAGCcGCcGCCGCaggcccuacucccgCCGCUGCCGc -3'
miRNA:   3'- gUGUCGaCGaUGGCGaa------------GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 152904 0.73 0.624132
Target:  5'- cCGCuGCUGCUGCUGCUguggaagucccugcuUCCGUcgcuuuguugguUGCCGa -3'
miRNA:   3'- -GUGuCGACGAUGGCGA---------------AGGCG------------ACGGC- -5'
10290 3' -58.1 NC_002687.1 + 57669 0.73 0.624132
Target:  5'- gCACAGCcgugUGCUAUCgauagacaacgguauGCUUCUGCUGUCGg -3'
miRNA:   3'- -GUGUCG----ACGAUGG---------------CGAAGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 226546 0.74 0.581654
Target:  5'- gACGGCUGggACCGCUgggaCCGCUGggaCCGa -3'
miRNA:   3'- gUGUCGACgaUGGCGAa---GGCGAC---GGC- -5'
10290 3' -58.1 NC_002687.1 + 11686 0.74 0.581654
Target:  5'- uGCuccuGCUGCcGCCGCUaCUGCUGCUGc -3'
miRNA:   3'- gUGu---CGACGaUGGCGAaGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 138337 0.74 0.562523
Target:  5'- gCGCGGCUGCUGCUGUggagaggCCGC-GUCGg -3'
miRNA:   3'- -GUGUCGACGAUGGCGaa-----GGCGaCGGC- -5'
10290 3' -58.1 NC_002687.1 + 10404 0.74 0.562523
Target:  5'- cUACuGCUGCUGCUGCUgccaccacuUCCGC-GCCa -3'
miRNA:   3'- -GUGuCGACGAUGGCGA---------AGGCGaCGGc -5'
10290 3' -58.1 NC_002687.1 + 277395 0.74 0.543566
Target:  5'- cCGC-GCUGCUACUGCUgCCgaGCUGCUGa -3'
miRNA:   3'- -GUGuCGACGAUGGCGAaGG--CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 297988 0.75 0.515544
Target:  5'- uGCGGCcGCcACCGCUUCCGaCUGgCGa -3'
miRNA:   3'- gUGUCGaCGaUGGCGAAGGC-GACgGC- -5'
10290 3' -58.1 NC_002687.1 + 291365 0.75 0.488122
Target:  5'- nGCuGCUGCUACUGUUgCUGCUGCUGc -3'
miRNA:   3'- gUGuCGACGAUGGCGAaGGCGACGGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.