miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10290 3' -58.1 NC_002687.1 + 281765 0.67 0.894507
Target:  5'- gGCAGC-GCaaGCCGCUcCCGUUGCgCGu -3'
miRNA:   3'- gUGUCGaCGa-UGGCGAaGGCGACG-GC- -5'
10290 3' -58.1 NC_002687.1 + 208880 0.67 0.894507
Target:  5'- cCAUcGUcGCUGCUGCUUCCaucgucGCUGCUGu -3'
miRNA:   3'- -GUGuCGaCGAUGGCGAAGG------CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 69451 0.68 0.881603
Target:  5'- gACAGCgcgUGCU-CCGCUUUCGCaGgCGg -3'
miRNA:   3'- gUGUCG---ACGAuGGCGAAGGCGaCgGC- -5'
10290 3' -58.1 NC_002687.1 + 282425 0.68 0.881603
Target:  5'- cCGCcGCUGCUGCCaCUacggCCcCUGCCGc -3'
miRNA:   3'- -GUGuCGACGAUGGcGAa---GGcGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 298246 0.68 0.877575
Target:  5'- uCACGGCcuuuuuuauuccuguUGCUACUGUUcgCCGCaGCCa -3'
miRNA:   3'- -GUGUCG---------------ACGAUGGCGAa-GGCGaCGGc -5'
10290 3' -58.1 NC_002687.1 + 13391 0.68 0.877575
Target:  5'- --uGGuCUGCUACCcuGCUgccuuucaccagcucUCUGCUGCCGu -3'
miRNA:   3'- gugUC-GACGAUGG--CGA---------------AGGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 48039 0.68 0.87485
Target:  5'- aGCAGCUGCUGCUGU---UGCUGUa- -3'
miRNA:   3'- gUGUCGACGAUGGCGaagGCGACGgc -5'
10290 3' -58.1 NC_002687.1 + 39612 0.68 0.867904
Target:  5'- aCGCAGgUG--ACCGcCUUCgGCUGCCa -3'
miRNA:   3'- -GUGUCgACgaUGGC-GAAGgCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 174000 0.69 0.845945
Target:  5'- cCACGuacGUUACCGCUUCCGCguccGCCu -3'
miRNA:   3'- -GUGUcgaCGAUGGCGAAGGCGa---CGGc -5'
10290 3' -58.1 NC_002687.1 + 145568 0.69 0.83827
Target:  5'- --aAGCUGUacgUGCCGCUUCCGUU-CUGg -3'
miRNA:   3'- gugUCGACG---AUGGCGAAGGCGAcGGC- -5'
10290 3' -58.1 NC_002687.1 + 160310 0.69 0.83827
Target:  5'- gGCGGCgGCUGCCuuggccgccccgGCUUCCuuUGCCu -3'
miRNA:   3'- gUGUCGaCGAUGG------------CGAAGGcgACGGc -5'
10290 3' -58.1 NC_002687.1 + 284268 0.69 0.833584
Target:  5'- cCGCcGCUGCUggcucacaagccccaGCCGCUgCUGCUGCg- -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAaGGCGACGgc -5'
10290 3' -58.1 NC_002687.1 + 114220 0.69 0.805955
Target:  5'- cCAUGGCUGUccCCGCUUgcaacaagCCGUUGCCa -3'
miRNA:   3'- -GUGUCGACGauGGCGAA--------GGCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 10650 0.7 0.797506
Target:  5'- cUACcuCUGCUACCGCUUCUuCUGCa- -3'
miRNA:   3'- -GUGucGACGAUGGCGAAGGcGACGgc -5'
10290 3' -58.1 NC_002687.1 + 10769 0.7 0.780213
Target:  5'- aCACAcccCUGCUGCaaccacgguCGCgUCCGCUGCCu -3'
miRNA:   3'- -GUGUc--GACGAUG---------GCGaAGGCGACGGc -5'
10290 3' -58.1 NC_002687.1 + 300226 0.7 0.771385
Target:  5'- gCACcGUUGgUACCGCUUCCaCcGCCGa -3'
miRNA:   3'- -GUGuCGACgAUGGCGAAGGcGaCGGC- -5'
10290 3' -58.1 NC_002687.1 + 322969 0.7 0.771385
Target:  5'- gUACuGCUGCUGCUGCU---GUUGCCGu -3'
miRNA:   3'- -GUGuCGACGAUGGCGAaggCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 208602 0.7 0.766034
Target:  5'- uCACuGCUGCUuccaucgucgucgcuGCUGCUUCCaucgucGCUGCUGc -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAAGG------CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 208749 0.7 0.766034
Target:  5'- uCACuGCUGCUuccaucgucgucgcuGCUGCUUCCaucgucGCUGCUGc -3'
miRNA:   3'- -GUGuCGACGA---------------UGGCGAAGG------CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 113724 0.7 0.762445
Target:  5'- gACGGCg---ACCGCgauuaCCGCUGCCGc -3'
miRNA:   3'- gUGUCGacgaUGGCGaa---GGCGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.