Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10290 | 3' | -58.1 | NC_002687.1 | + | 174000 | 0.69 | 0.845945 |
Target: 5'- cCACGuacGUUACCGCUUCCGCguccGCCu -3' miRNA: 3'- -GUGUcgaCGAUGGCGAAGGCGa---CGGc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 10686 | 0.67 | 0.90659 |
Target: 5'- cCACAaCUGCcGCCGCcacugCCGCcGCCa -3' miRNA: 3'- -GUGUcGACGaUGGCGaa---GGCGaCGGc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 304249 | 0.67 | 0.90659 |
Target: 5'- uCGCAGCUcagagcGCUACUGCUgCUGCaGCUa -3' miRNA: 3'- -GUGUCGA------CGAUGGCGAaGGCGaCGGc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 283306 | 0.67 | 0.900653 |
Target: 5'- ---uGCUGUUGCUGUUcCUGCUGCUGc -3' miRNA: 3'- guguCGACGAUGGCGAaGGCGACGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 208880 | 0.67 | 0.894507 |
Target: 5'- cCAUcGUcGCUGCUGCUUCCaucgucGCUGCUGu -3' miRNA: 3'- -GUGuCGaCGAUGGCGAAGG------CGACGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 282425 | 0.68 | 0.881603 |
Target: 5'- cCGCcGCUGCUGCCaCUacggCCcCUGCCGc -3' miRNA: 3'- -GUGuCGACGAUGGcGAa---GGcGACGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 298246 | 0.68 | 0.877575 |
Target: 5'- uCACGGCcuuuuuuauuccuguUGCUACUGUUcgCCGCaGCCa -3' miRNA: 3'- -GUGUCG---------------ACGAUGGCGAa-GGCGaCGGc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 13391 | 0.68 | 0.877575 |
Target: 5'- --uGGuCUGCUACCcuGCUgccuuucaccagcucUCUGCUGCCGu -3' miRNA: 3'- gugUC-GACGAUGG--CGA---------------AGGCGACGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 39612 | 0.68 | 0.867904 |
Target: 5'- aCGCAGgUG--ACCGcCUUCgGCUGCCa -3' miRNA: 3'- -GUGUCgACgaUGGC-GAAGgCGACGGc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 296066 | 0.67 | 0.912317 |
Target: 5'- gCACGGCaucaGCc-CCGCUgcUCCGCUGCa- -3' miRNA: 3'- -GUGUCGa---CGauGGCGA--AGGCGACGgc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 276333 | 0.66 | 0.927721 |
Target: 5'- aCACAGCaUGa-ACCGCgUCCacuugcaucagcaGCUGCCGc -3' miRNA: 3'- -GUGUCG-ACgaUGGCGaAGG-------------CGACGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 270393 | 0.66 | 0.92822 |
Target: 5'- -cCAGCUGCUgcauacaauccACCGUUUCCgGCaGCgGg -3' miRNA: 3'- guGUCGACGA-----------UGGCGAAGG-CGaCGgC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 102895 | 0.66 | 0.946431 |
Target: 5'- uCGCuguuGCUGUUGCUGCUguugUUGUUGCUGc -3' miRNA: 3'- -GUGu---CGACGAUGGCGAa---GGCGACGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 210387 | 0.66 | 0.937751 |
Target: 5'- uGCAGCUGCaccACUGCca-CGaCUGCCa -3' miRNA: 3'- gUGUCGACGa--UGGCGaagGC-GACGGc -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 304219 | 0.66 | 0.937751 |
Target: 5'- nUACGGUUGCU-CCggggGCUaggcCCGCUGCUGu -3' miRNA: 3'- -GUGUCGACGAuGG----CGAa---GGCGACGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 291382 | 0.66 | 0.934982 |
Target: 5'- gGCAGCUGCuUuuguguuuuuuuauuGCCGC--CCGC-GCCGg -3' miRNA: 3'- gUGUCGACG-A---------------UGGCGaaGGCGaCGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 319287 | 0.66 | 0.933092 |
Target: 5'- aCAUAGCUGCgUGCC-CUUCCGa--CCGc -3' miRNA: 3'- -GUGUCGACG-AUGGcGAAGGCgacGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 279370 | 0.66 | 0.933092 |
Target: 5'- uGCAGCUGacgcuggagUGCCGUccggUUCCaCUGCCGc -3' miRNA: 3'- gUGUCGACg--------AUGGCG----AAGGcGACGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 298278 | 0.66 | 0.933092 |
Target: 5'- gACGGUUGUUGCgUGCggCUGgaGCCGa -3' miRNA: 3'- gUGUCGACGAUG-GCGaaGGCgaCGGC- -5' |
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10290 | 3' | -58.1 | NC_002687.1 | + | 22995 | 0.66 | 0.92822 |
Target: 5'- uGCGGUUGCUucaACCGCgucCCGUgagcGCCu -3' miRNA: 3'- gUGUCGACGA---UGGCGaa-GGCGa---CGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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