miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10292 5' -48.6 NC_002687.1 + 18186 1.11 0.018161
Target:  5'- cUUUGCUUGUGCUCUGUGCAAAACGCCg -3'
miRNA:   3'- -AAACGAACACGAGACACGUUUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 17851 1 0.088786
Target:  5'- -cUGCUUGUGCUCUGcGCAAAACGCCg -3'
miRNA:   3'- aaACGAACACGAGACaCGUUUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 17964 0.97 0.119441
Target:  5'- -cUGUucUUGUGCUCUGUGCAAAACGCCg -3'
miRNA:   3'- aaACG--AACACGAGACACGUUUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 18073 0.95 0.168245
Target:  5'- -cUGUUUGUGCUCUGcGCAAAACGCCg -3'
miRNA:   3'- aaACGAACACGAGACaCGUUUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 18298 0.92 0.240053
Target:  5'- --cGCUcuucuUGUGCUUUGUGCAAAACGCCg -3'
miRNA:   3'- aaaCGA-----ACACGAGACACGUUUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 17740 0.9 0.313082
Target:  5'- -cUGCUUGUGCgCUGcGCAAAACGCCg -3'
miRNA:   3'- aaACGAACACGaGACaCGUUUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 299058 0.72 0.988502
Target:  5'- --cGCgUGUGaacaUCUGUGCAgcauaugcagaagAGGCGCCg -3'
miRNA:   3'- aaaCGaACACg---AGACACGU-------------UUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 96363 0.72 0.990026
Target:  5'- gUUGCUcgcGUGCUUgGUGCc-GGCGCCg -3'
miRNA:   3'- aAACGAa--CACGAGaCACGuuUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 284681 0.7 0.995775
Target:  5'- -aUGCUgcUGCaUCUGUGgAAGGCGCa -3'
miRNA:   3'- aaACGAacACG-AGACACgUUUUGCGg -5'
10292 5' -48.6 NC_002687.1 + 121766 0.7 0.996334
Target:  5'- --cGCcUGUGaUCUGgaggugaagacuuUGCAAAGCGCCg -3'
miRNA:   3'- aaaCGaACACgAGAC-------------ACGUUUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 138346 0.7 0.996392
Target:  5'- cUUGUUUGUGCgcggCUGcUGCugugGAGAgGCCg -3'
miRNA:   3'- aAACGAACACGa---GAC-ACG----UUUUgCGG- -5'
10292 5' -48.6 NC_002687.1 + 244475 0.69 0.998957
Target:  5'- gUUGCg---GCagucagaUGUGCAGGACGCCu -3'
miRNA:   3'- aAACGaacaCGag-----ACACGUUUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 63950 0.68 0.999128
Target:  5'- aUUGCg-GUGUUCuacuuguggcguuUGUGCGAGcGCGCCa -3'
miRNA:   3'- aAACGaaCACGAG-------------ACACGUUU-UGCGG- -5'
10292 5' -48.6 NC_002687.1 + 18487 0.68 0.999145
Target:  5'- -gUGCUaGUGCUcCUGUagcaGCAGAaggaggccaccGCGCCc -3'
miRNA:   3'- aaACGAaCACGA-GACA----CGUUU-----------UGCGG- -5'
10292 5' -48.6 NC_002687.1 + 29448 0.68 0.999435
Target:  5'- --aGCUgg-GCUCUGUGUAcauuucAACGCUa -3'
miRNA:   3'- aaaCGAacaCGAGACACGUu-----UUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 14659 0.68 0.999545
Target:  5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3'
miRNA:   3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5'
10292 5' -48.6 NC_002687.1 + 16375 0.68 0.999545
Target:  5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3'
miRNA:   3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5'
10292 5' -48.6 NC_002687.1 + 15783 0.68 0.999545
Target:  5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3'
miRNA:   3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5'
10292 5' -48.6 NC_002687.1 + 15517 0.68 0.999545
Target:  5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3'
miRNA:   3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5'
10292 5' -48.6 NC_002687.1 + 14924 0.68 0.999545
Target:  5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3'
miRNA:   3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.