Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10292 | 5' | -48.6 | NC_002687.1 | + | 3975 | 0.66 | 0.999964 |
Target: 5'- -gUGCgcaUGUGCUCgucgugacGUGUccGACGCUa -3' miRNA: 3'- aaACGa--ACACGAGa-------CACGuuUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 14066 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 14347 | 0.66 | 0.999964 |
Target: 5'- gUUGCUacacacugcUGUGCcugCUGUGU---GCGCUg -3' miRNA: 3'- aAACGA---------ACACGa--GACACGuuuUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 14659 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 14924 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 15206 | 0.66 | 0.999964 |
Target: 5'- gUUGCUacacacugcUGUGCcugCUGUGU---GCGCUg -3' miRNA: 3'- aAACGA---------ACACGa--GACACGuuuUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 15517 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 15783 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 16064 | 0.66 | 0.999964 |
Target: 5'- gUUGCUacacacugcUGUGCcugCUGUGU---GCGCUg -3' miRNA: 3'- aAACGA---------ACACGa--GACACGuuuUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 16375 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 16640 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 16971 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 17439 | 0.66 | 0.999964 |
Target: 5'- -cUGCUgugaagUGUGUgCUGUGCGuAGCgaGCCa -3' miRNA: 3'- aaACGA------ACACGaGACACGUuUUG--CGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 17740 | 0.9 | 0.313082 |
Target: 5'- -cUGCUUGUGCgCUGcGCAAAACGCCg -3' miRNA: 3'- aaACGAACACGaGACaCGUUUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 17851 | 1 | 0.088786 |
Target: 5'- -cUGCUUGUGCUCUGcGCAAAACGCCg -3' miRNA: 3'- aaACGAACACGAGACaCGUUUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 17964 | 0.97 | 0.119441 |
Target: 5'- -cUGUucUUGUGCUCUGUGCAAAACGCCg -3' miRNA: 3'- aaACG--AACACGAGACACGUUUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 18073 | 0.95 | 0.168245 |
Target: 5'- -cUGUUUGUGCUCUGcGCAAAACGCCg -3' miRNA: 3'- aaACGAACACGAGACaCGUUUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 18186 | 1.11 | 0.018161 |
Target: 5'- cUUUGCUUGUGCUCUGUGCAAAACGCCg -3' miRNA: 3'- -AAACGAACACGAGACACGUUUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 18298 | 0.92 | 0.240053 |
Target: 5'- --cGCUcuucuUGUGCUUUGUGCAAAACGCCg -3' miRNA: 3'- aaaCGA-----ACACGAGACACGUUUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 18487 | 0.68 | 0.999145 |
Target: 5'- -gUGCUaGUGCUcCUGUagcaGCAGAaggaggccaccGCGCCc -3' miRNA: 3'- aaACGAaCACGA-GACA----CGUUU-----------UGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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