miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10292 5' -48.6 NC_002687.1 + 96363 0.72 0.990026
Target:  5'- gUUGCUcgcGUGCUUgGUGCc-GGCGCCg -3'
miRNA:   3'- aAACGAa--CACGAGaCACGuuUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 3975 0.66 0.999964
Target:  5'- -gUGCgcaUGUGCUCgucgugacGUGUccGACGCUa -3'
miRNA:   3'- aaACGa--ACACGAGa-------CACGuuUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 32868 0.67 0.999892
Target:  5'- ------cGUGaCUCUGUGCGAAAauCGCUg -3'
miRNA:   3'- aaacgaaCAC-GAGACACGUUUU--GCGG- -5'
10292 5' -48.6 NC_002687.1 + 246177 0.67 0.99986
Target:  5'- cUUGUUUGUGCUCUcccagGCGAGAaaggacaGUCg -3'
miRNA:   3'- aAACGAACACGAGAca---CGUUUUg------CGG- -5'
10292 5' -48.6 NC_002687.1 + 105534 0.67 0.99971
Target:  5'- --aGCga--GCUCUG-GCAAAAgGCCa -3'
miRNA:   3'- aaaCGaacaCGAGACaCGUUUUgCGG- -5'
10292 5' -48.6 NC_002687.1 + 29448 0.68 0.999435
Target:  5'- --aGCUgg-GCUCUGUGUAcauuucAACGCUa -3'
miRNA:   3'- aaaCGAacaCGAGACACGUu-----UUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 290604 0.66 0.999973
Target:  5'- -aUGCgc-UGCUgCUGUGCA--ACGUCu -3'
miRNA:   3'- aaACGaacACGA-GACACGUuuUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 88812 0.66 0.999964
Target:  5'- -cUGCUUGacauugGCacgCUGUGCAAGACaUCa -3'
miRNA:   3'- aaACGAACa-----CGa--GACACGUUUUGcGG- -5'
10292 5' -48.6 NC_002687.1 + 96635 0.67 0.99986
Target:  5'- --gGCUUGUGCUCU-UGUucguCGUCg -3'
miRNA:   3'- aaaCGAACACGAGAcACGuuuuGCGG- -5'
10292 5' -48.6 NC_002687.1 + 18487 0.68 0.999145
Target:  5'- -gUGCUaGUGCUcCUGUagcaGCAGAaggaggccaccGCGCCc -3'
miRNA:   3'- aaACGAaCACGA-GACA----CGUUU-----------UGCGG- -5'
10292 5' -48.6 NC_002687.1 + 121766 0.7 0.996334
Target:  5'- --cGCcUGUGaUCUGgaggugaagacuuUGCAAAGCGCCg -3'
miRNA:   3'- aaaCGaACACgAGAC-------------ACGUUUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 244475 0.69 0.998957
Target:  5'- gUUGCg---GCagucagaUGUGCAGGACGCCu -3'
miRNA:   3'- aAACGaacaCGag-----ACACGUUUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 329231 0.66 0.999952
Target:  5'- -aUGCUcGacCUCgg-GCAAAACGCCg -3'
miRNA:   3'- aaACGAaCacGAGacaCGUUUUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 16064 0.66 0.999964
Target:  5'- gUUGCUacacacugcUGUGCcugCUGUGU---GCGCUg -3'
miRNA:   3'- aAACGA---------ACACGa--GACACGuuuUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 156450 0.66 0.999952
Target:  5'- -gUGUUUGagaacGCUCaccacgccaUGUGCGAcgucGACGCCa -3'
miRNA:   3'- aaACGAACa----CGAG---------ACACGUU----UUGCGG- -5'
10292 5' -48.6 NC_002687.1 + 16375 0.68 0.999545
Target:  5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3'
miRNA:   3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5'
10292 5' -48.6 NC_002687.1 + 15783 0.68 0.999545
Target:  5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3'
miRNA:   3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5'
10292 5' -48.6 NC_002687.1 + 15517 0.68 0.999545
Target:  5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3'
miRNA:   3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5'
10292 5' -48.6 NC_002687.1 + 14924 0.68 0.999545
Target:  5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3'
miRNA:   3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5'
10292 5' -48.6 NC_002687.1 + 30024 0.66 0.999937
Target:  5'- --cGCUUGUGaCU-UGUGCA--ACGCg -3'
miRNA:   3'- aaaCGAACAC-GAgACACGUuuUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.