Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10292 | 5' | -48.6 | NC_002687.1 | + | 299058 | 0.72 | 0.988502 |
Target: 5'- --cGCgUGUGaacaUCUGUGCAgcauaugcagaagAGGCGCCg -3' miRNA: 3'- aaaCGaACACg---AGACACGU-------------UUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 284681 | 0.7 | 0.995775 |
Target: 5'- -aUGCUgcUGCaUCUGUGgAAGGCGCa -3' miRNA: 3'- aaACGAacACG-AGACACgUUUUGCGg -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 14066 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 262481 | 0.68 | 0.999636 |
Target: 5'- -gUGCUUcccGUGCUUcccGUGCuuGGCGUCg -3' miRNA: 3'- aaACGAA---CACGAGa--CACGuuUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 32401 | 0.67 | 0.99986 |
Target: 5'- --cGCUUucagGUGCgacaCU-UGCGGAGCGCCg -3' miRNA: 3'- aaaCGAA----CACGa---GAcACGUUUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 30024 | 0.66 | 0.999937 |
Target: 5'- --cGCUUGUGaCU-UGUGCA--ACGCg -3' miRNA: 3'- aaaCGAACAC-GAgACACGUuuUGCGg -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 265167 | 0.66 | 0.999964 |
Target: 5'- gUUGCUgggagauccGUGUUCaGUGCGAAAuCGUCc -3' miRNA: 3'- aAACGAa--------CACGAGaCACGUUUU-GCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 17439 | 0.66 | 0.999964 |
Target: 5'- -cUGCUgugaagUGUGUgCUGUGCGuAGCgaGCCa -3' miRNA: 3'- aaACGA------ACACGaGACACGUuUUG--CGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 16064 | 0.66 | 0.999964 |
Target: 5'- gUUGCUacacacugcUGUGCcugCUGUGU---GCGCUg -3' miRNA: 3'- aAACGA---------ACACGa--GACACGuuuUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 15206 | 0.66 | 0.999964 |
Target: 5'- gUUGCUacacacugcUGUGCcugCUGUGU---GCGCUg -3' miRNA: 3'- aAACGA---------ACACGa--GACACGuuuUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 14659 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 14924 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 138346 | 0.7 | 0.996392 |
Target: 5'- cUUGUUUGUGCgcggCUGcUGCugugGAGAgGCCg -3' miRNA: 3'- aAACGAACACGa---GAC-ACG----UUUUgCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 63950 | 0.68 | 0.999128 |
Target: 5'- aUUGCg-GUGUUCuacuuguggcguuUGUGCGAGcGCGCCa -3' miRNA: 3'- aAACGaaCACGAG-------------ACACGUUU-UGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 295505 | 0.68 | 0.999545 |
Target: 5'- --cGCcgUGUGC----UGCAGGACGCCa -3' miRNA: 3'- aaaCGa-ACACGagacACGUUUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 16971 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 16640 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 16375 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 15783 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 15517 | 0.68 | 0.999545 |
Target: 5'- -cUGCUgugUGUGCUgaaUGUGUAGGuUGCCu -3' miRNA: 3'- aaACGA---ACACGAg--ACACGUUUuGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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