Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10292 | 5' | -48.6 | NC_002687.1 | + | 29448 | 0.68 | 0.999435 |
Target: 5'- --aGCUgg-GCUCUGUGUAcauuucAACGCUa -3' miRNA: 3'- aaaCGAacaCGAGACACGUu-----UUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 30024 | 0.66 | 0.999937 |
Target: 5'- --cGCUUGUGaCU-UGUGCA--ACGCg -3' miRNA: 3'- aaaCGAACAC-GAgACACGUuuUGCGg -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 32401 | 0.67 | 0.99986 |
Target: 5'- --cGCUUucagGUGCgacaCU-UGCGGAGCGCCg -3' miRNA: 3'- aaaCGAA----CACGa---GAcACGUUUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 32868 | 0.67 | 0.999892 |
Target: 5'- ------cGUGaCUCUGUGCGAAAauCGCUg -3' miRNA: 3'- aaacgaaCAC-GAGACACGUUUU--GCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 63950 | 0.68 | 0.999128 |
Target: 5'- aUUGCg-GUGUUCuacuuguggcguuUGUGCGAGcGCGCCa -3' miRNA: 3'- aAACGaaCACGAG-------------ACACGUUU-UGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 88812 | 0.66 | 0.999964 |
Target: 5'- -cUGCUUGacauugGCacgCUGUGCAAGACaUCa -3' miRNA: 3'- aaACGAACa-----CGa--GACACGUUUUGcGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 96363 | 0.72 | 0.990026 |
Target: 5'- gUUGCUcgcGUGCUUgGUGCc-GGCGCCg -3' miRNA: 3'- aAACGAa--CACGAGaCACGuuUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 96635 | 0.67 | 0.99986 |
Target: 5'- --gGCUUGUGCUCU-UGUucguCGUCg -3' miRNA: 3'- aaaCGAACACGAGAcACGuuuuGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 105534 | 0.67 | 0.99971 |
Target: 5'- --aGCga--GCUCUG-GCAAAAgGCCa -3' miRNA: 3'- aaaCGaacaCGAGACaCGUUUUgCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 121766 | 0.7 | 0.996334 |
Target: 5'- --cGCcUGUGaUCUGgaggugaagacuuUGCAAAGCGCCg -3' miRNA: 3'- aaaCGaACACgAGAC-------------ACGUUUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 138346 | 0.7 | 0.996392 |
Target: 5'- cUUGUUUGUGCgcggCUGcUGCugugGAGAgGCCg -3' miRNA: 3'- aAACGAACACGa---GAC-ACG----UUUUgCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 156450 | 0.66 | 0.999952 |
Target: 5'- -gUGUUUGagaacGCUCaccacgccaUGUGCGAcgucGACGCCa -3' miRNA: 3'- aaACGAACa----CGAG---------ACACGUU----UUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 244475 | 0.69 | 0.998957 |
Target: 5'- gUUGCg---GCagucagaUGUGCAGGACGCCu -3' miRNA: 3'- aAACGaacaCGag-----ACACGUUUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 246177 | 0.67 | 0.99986 |
Target: 5'- cUUGUUUGUGCUCUcccagGCGAGAaaggacaGUCg -3' miRNA: 3'- aAACGAACACGAGAca---CGUUUUg------CGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 262481 | 0.68 | 0.999636 |
Target: 5'- -gUGCUUcccGUGCUUcccGUGCuuGGCGUCg -3' miRNA: 3'- aaACGAA---CACGAGa--CACGuuUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 265167 | 0.66 | 0.999964 |
Target: 5'- gUUGCUgggagauccGUGUUCaGUGCGAAAuCGUCc -3' miRNA: 3'- aAACGAa--------CACGAGaCACGUUUU-GCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 284681 | 0.7 | 0.995775 |
Target: 5'- -aUGCUgcUGCaUCUGUGgAAGGCGCa -3' miRNA: 3'- aaACGAacACG-AGACACgUUUUGCGg -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 290604 | 0.66 | 0.999973 |
Target: 5'- -aUGCgc-UGCUgCUGUGCA--ACGUCu -3' miRNA: 3'- aaACGaacACGA-GACACGUuuUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 295505 | 0.68 | 0.999545 |
Target: 5'- --cGCcgUGUGC----UGCAGGACGCCa -3' miRNA: 3'- aaaCGa-ACACGagacACGUUUUGCGG- -5' |
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10292 | 5' | -48.6 | NC_002687.1 | + | 299058 | 0.72 | 0.988502 |
Target: 5'- --cGCgUGUGaacaUCUGUGCAgcauaugcagaagAGGCGCCg -3' miRNA: 3'- aaaCGaACACg---AGACACGU-------------UUUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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